Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq69 120 4e-22
seq24 111 2e-19
>seq69
Length=174959
Score = 120 bits (132), Expect = 4e-22
Identities = 303/456 (66%), Gaps = 5/456 (1%)
Strand=Plus/Plus
Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564
||| | |||| || |||||||| || | || ||| || |||||||| || ||
Sbjct 173047 GTACAGAGCC--TCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGG 173104
Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624
||||| | | ||| || | | | || || || ||||| || || |||||||||||
Sbjct 173105 CACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCAC 173164
Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCG 69684
|| |||| ||||| || | | || | || || || || || || | |||
Sbjct 173165 AGGGCTAAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCC 173224
Query 69685 AGAAACTCCATAATATCAGAATGCCA-TGGTTCTAGATATATCGCCATGACTCCCGGTCG 69743
|||||||| | | ||||| |||||| ||| || || ||||| || | | | || || ||
Sbjct 173225 AGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCG 173284
Query 69744 TTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803
|| || || ||||| || | ||| | ||| ||||| ||| |||| | ||||| |||||
Sbjct 173285 CTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAAT 173344
Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863
| ||| || || | || || || || | ||| || || | || || || |
Sbjct 173345 GACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATG 173404
Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT-TTCAATGTGT 69922
| || || || || || ||||| |||||||| | || | |||| || | ||||
Sbjct 173405 CACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCATGGCGC-ACGTCTTGAGCGTGT 173463
Query 69923 CATATATACCCTCTATGCTATCATCTATCATGTTAA 69958
| || || ||||| ||||| ||||| |||||| ||
Sbjct 173464 CGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAA 173499
>seq24
Length=328731
Score = 111 bits (122), Expect = 2e-19
Identities = 224/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898
|| || |||||||| |||||||| | | || | || || | ||| ||||| ||
Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445
Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958
| || || | || || |||||||| || ||| |||||||||||||| || ||
Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385
Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018
| || || | || || ||||| | || | || |||| |||||||| || ||
Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325
Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078
|| || ||||| ||||| |||| | || | |||||| ||||| || ||
Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265
Query 40079 AAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135
| || |||||||||| | || || || | ||||| ||| || |||||||||||
Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205
Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167
|| ||||||||||| |||||||| | ||| ||
Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686903837083920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |