Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq69 120 4e-22 seq24 111 2e-19 >seq69 Length=174959 Score = 120 bits (132), Expect = 4e-22 Identities = 303/456 (66%), Gaps = 5/456 (1%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||| | |||| || |||||||| || | || ||| || |||||||| || || Sbjct 173047 GTACAGAGCC--TCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGG 173104 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 ||||| | | ||| || | | | || || || ||||| || || ||||||||||| Sbjct 173105 CACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCAC 173164 Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCG 69684 || |||| ||||| || | | || | || || || || || || | ||| Sbjct 173165 AGGGCTAAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCC 173224 Query 69685 AGAAACTCCATAATATCAGAATGCCA-TGGTTCTAGATATATCGCCATGACTCCCGGTCG 69743 |||||||| | | ||||| |||||| ||| || || ||||| || | | | || || || Sbjct 173225 AGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCG 173284 Query 69744 TTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 || || || ||||| || | ||| | ||| ||||| ||| |||| | ||||| ||||| Sbjct 173285 CTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAAT 173344 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 | ||| || || | || || || || | ||| || || | || || || | Sbjct 173345 GACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATG 173404 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT-TTCAATGTGT 69922 | || || || || || ||||| |||||||| | || | |||| || | |||| Sbjct 173405 CACGTTGAGCCCGATGCCACCGGCCATCTTAGAGATCATGGCGC-ACGTCTTGAGCGTGT 173463 Query 69923 CATATATACCCTCTATGCTATCATCTATCATGTTAA 69958 | || || ||||| ||||| ||||| |||||| || Sbjct 173464 CGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAA 173499 >seq24 Length=328731 Score = 111 bits (122), Expect = 2e-19 Identities = 224/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 || || |||||||| |||||||| | | || | || || | ||| ||||| || Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | || || | || || |||||||| || ||| |||||||||||||| || || Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | || || | || || ||||| | || | || |||| |||||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 || || ||||| ||||| |||| | || | |||||| ||||| || || Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 40079 AAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135 | || |||||||||| | || || || | ||||| ||| || ||||||||||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || ||||||||||| |||||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903837083920