Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq69 183 4e-41 seq18 84.2 3e-11 >seq69 Length=174959 Score = 183 bits (202), Expect = 4e-41 Identities = 698/1086 (64%), Gaps = 36/1086 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || || | |||||| | ||| Sbjct 172281 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATTTGCGACGTGC 172340 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| || |||||||| || | || | ||||||||| | | Sbjct 172341 TGGCCGTCGGCATAGGGGCCACCAGCAGACTGTTGCGTATGCCATACTCCTTGATCTGCT 172400 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGCTT----GGTTTCACCTTCCCACATGTCAAAC 110881 || ||| ||||| || || |||| || |||||||||| |||| |||||| Sbjct 172401 CCCGGAGCGTTTCCCACTCCCAG---AGCTCTGAAGGCTTCACCTTCC-ACATATCAAAC 172456 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || ||||| || | ||||| || || || | ||| | |||| |||| | | Sbjct 172457 TGGAGCACGCCCTCCGACGCAGGCGATCCTTTAAACGACGAGTAGGGCCCTTCGCTCTTT 172516 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||| || || || | ||||| || ||||| || || || || Sbjct 172517 GCCAGCTCCATTGAGGCAGTCAACGCGGCGTGGTAGATGGTCTCGAATATTTTCTGGTTT 172576 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCG 111056 | |||| ||| || || ||||| |||| || | || |||| |||| | Sbjct 172577 AGCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGAGAGCCAGAAAAG-----CATCAG 172631 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | || || || ||||| | |||||| |||| ||| ||||| || ||| | || | Sbjct 172632 CCAGGCCCTGGACACCAACACCAATCGGTCGGTGGCGCATGTTGCTGTTTTGGGCCTCTT 172691 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 |||| || ||| || ||| |||| | || || || | || | || || | Sbjct 172692 CAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTACGGACGACGACCTGCGTCA 172751 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 || || || || | | || | || || | | ||| | || |||| Sbjct 172752 CCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGGTCATAGTCGACGAAGGCAGGCAGGG 172811 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | | || |||| |||||| ||||| ||||| | | |||||| | ||||| | Sbjct 172812 CTAGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAGAGTACTCAACGATTTCCG 172871 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || | ||| |||||| ||| || |||| |||||||| || ||||| |||||| Sbjct 172872 TGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAAT 172931 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 ||||||||| |||||| | || | ||||| ||||||||| || || |||| | || Sbjct 172932 GATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACC 172991 Query 111417 AAA-CATCGGCGGCTGGTACAATGGCGTT-GGCC-CGTCCCTCCGCCTCGTACTTTGTGT 111473 | | | || | | | | || | | | |||| || ||||| |||||||||| || Sbjct 172992 ACAGCTTCTGAGCCCG---CACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGT 173048 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | || || ||||| || || || ||||| ||||| || | || || || | Sbjct 173049 ACAGAGCCTCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACA 173108 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 || | ||| | ||| || ||| || ||||||||||| ||||| ||||||||||||| Sbjct 173109 TGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGG 173168 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 | | ||||| || | | ||| |||| || | || ||||| || || || || | Sbjct 173169 CTAAGAAGAGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAA 173228 Query 111654 ACTCCATGATATCCGCGTGCCA-TGGCTCAAGATAGACTGCGATAGATCC------CTT- 111705 |||| | || ||| || ||||| |||||| || || | || | | || ||| Sbjct 173229 ACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTG 173288 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | | ||||| || | || ||||| || ||| |||||| || |||||||| ||||| Sbjct 173289 TTGCCGCCC----TGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAAT 173344 Query 111766 AATACC 111771 | ||| Sbjct 173345 GACACC 173350 >seq18 Length=371689 Score = 84.2 bits (92), Expect = 3e-11 Identities = 214/320 (67%), Gaps = 7/320 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| |||| || | |||||| | ||| |||| || || || ||| Sbjct 185094 AAAGCCATCCATTTCGGCAAGGATTTGATTCAGTGTGGCCTCTCGTTCCTCGTTGCCTGT 185153 Query 11599 CATACCACCAGCACTGCGT--TG--CTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 ||| | | || ||| || |||||| | || ||||||||||| ||||||| | Sbjct 185154 -ATAGCCTCGGCCTTGCACCCTGGACTTGCCAATAGCGTCAATCTCATCGATGAAGATTA 185212 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 ||||||| ||| | || | | | || | ||||| || || | ||| |||| Sbjct 185213 TACATGGAGCATTCTTACGACCCTCTGCGAATAAGTCGCGTACTCTGGACGAACCGACAC 185272 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATTTGATTCA 11773 | ||||||||||||| ||| | | || | | ||| | || | ||| ||| || Sbjct 185273 CCACAAACATCTCCATAAACTCGGACCCACTGACGCTGAAA-AAGGCGACTCCTGACTCT 185331 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || |||| ||| ||||| || || ||||| || || || ||||||| || Sbjct 185332 CCAGCCGTGGCCTTGGCTAGGAGTGTTTTACCCGTGCCCGGAGGTCCGGCGAGAATAGCA 185391 Query 11834 CCTCGGGGGATCTTGGCACC 11853 || || |||||||||||||| Sbjct 185392 CCACGCGGGATCTTGGCACC 185411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027462468800