Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq84 269 8e-67 seq12 150 5e-31 seq14 109 2e-18 seq11 95.1 4e-14 >seq84 Length=74915 Score = 269 bits (298), Expect = 8e-67 Identities = 960/1481 (65%), Gaps = 26/1481 (2%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| | || ||||| || ||||| || || || || || | | | | | | |||| Sbjct 23718 CCGCCGTCGGCATCGACTTGGGTACCACGTACTCGTGCGTGGGCATCTTCCGAGAGGATC 23777 Query 349257 G-TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTT 349315 | ||| || || ||||| ||||||||||| || | || || || || | ||| || || Sbjct 23778 GGTGT-GAGATCATTGCCAATGATCAAGGCAATCGCACCACTCCCTCCTTCGTCGCTTTC 23836 Query 349316 ACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAA 349375 || || || ||||| ||||||| ||| | || || ||||||| || || || | Sbjct 23837 ACGGACACAGAGCGCCTGATTGGCGATGCCGCGAAGAATCAAGTGGCCATGAACCCTCAT 23896 Query 349376 AATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTC--TGACAAATCTACA 349432 || || || || ||||| ||||| | ||||| | || || | || | || | Sbjct 23897 AACACTGTCTTCGATGCGAAGCGGTTGATTGGACGCAAATTCAGCGATGCCGAAGTT--- 23953 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || | || | || ||||| ||||||| ||||| |||| ||| || || | Sbjct 23954 CAGGCCGACATGAAGCATTTCCCTTTTAAAATTGTTGATAAAGCCGGC---AAGCCCGTG 24010 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 || || ||||| | || || || | || ||| ||| |||||||| || || ||| Sbjct 24011 ATAGAAGTTGAGTTCAAGGGAGAGAAGAAGACATTCACACCTGAAGAAATCTCTTCGATG 24070 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTTAGGTGAAACAGTAACTGATGC 349611 || || ||| ||| || | ||| || ||| ||| | |||| || || || | || Sbjct 24071 GTGTTGACTAAGATGCGCGAGACTGCCGAGAGC-TATCTTGGTGGCACTGTCACCAACGC 24129 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 || || ||||| || ||||| || || || ||| ||| || || || || || || Sbjct 24130 CGTCATCACTGTCCCTGCCTACTTCAACGACAGCCAACGTCAAGCCACCAAGGACGCCGG 24189 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 | |||||| || | ||||| || | || ||||| ||||| || || || || ||||| Sbjct 24190 CCTCATTGCAGGTCTGAATGTCCTGCGCATTATTAACGAACCTACGGCGGCTGCCATTGC 24249 Query 349732 ATATGGGCTTGATAAAATGAGTG-ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 ||||| || ||||| | |||| | || || | || |||||||| ||||||| Sbjct 24250 TTATGGCCTGGATAAGAA-AGTGGAGGGCGAGCGCAACGTCCTCATTTTTGACTTAGGTG 24308 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 ||||||| || |||||||| || || || |||| |||||||| || || || || | | Sbjct 24309 GTGGTACATTCGATGTATCCCTCCTTACCATTGAGGAGGGAATATTCGAGGTCAAGTCGA 24368 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | ||||| ||||| ||||||||||| || ||||| || |||||| | || || || | Sbjct 24369 CAGCTGGCGATACCCATCTTGGTGGTGAGGATTTCGACAATCGTTTGGTCAACCACTTCG 24428 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGA--TATTGGAGATAATCCTAGAGCAATGC 349967 | || ||||| ||||| ||||| || | || | | || | || | || | | Sbjct 24429 TGAACGAATTCAAGCG-CAAGCACAAGAAGGACTTGTCCTCGAACAGCC--GTGCCCTTC 24485 Query 349968 GTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCT 350027 | || || | ||||| || || || || ||||| | | || || | | || |||| Sbjct 24486 GCCGACTTCGCACTGCCTGCGAGCGAGCCAAGCGCACACTGTCTTCCTCGGCACAGACCT 24545 Query 350028 CTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 | || || ||||| ||||| ||| || | ||||||| |||| || || ||||||| Sbjct 24546 CGATCGAGATTGACTCTCTGTTTGAGGGTATCGATTTCTACACATCCATCACCCGTGCTC 24605 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | || || || | || ||| | || | | || || | || || || || Sbjct 24606 GTTTCGAGGAGCTTTGCCAAGATTTGTTCCGCTCTACCATCCAGCCAGTCGACCGCGTTC 24665 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGA-TTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | ||||| || || | || | || | || |||| | || | || || || ||| Sbjct 24666 TTGCGGATGCCAAGAT-TGATAAGAGCAAAGTTCATGAGATTGTCCTTGTCGGCGGCTCT 24724 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || || || || |||| || | | | || | || || |||||||| || Sbjct 24725 ACTCGCATCCCCCGCATTCAGAAGCTCATTACCGACTACTTCAACGGCAAAGAGCCCAAC 24784 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 | || || || || || ||||| ||||| || || || || || ||||| | ||| || Sbjct 24785 AAGTCTATCAACCCCGACGAAGCCGTTGCCTACGGCGCAGCCGTCCAGGCTGCCATTCTA 24844 Query 350327 TCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTT 350383 ||||| | | ||| || | | | || | ||||| | || || | || || Sbjct 24845 TCTGGCGACACTTCTTCCAAGTCGACTAACGAGATCCTACTATTGGACGTTGCGCCCCTG 24904 Query 350384 TCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACT 350443 || ||||| | || ||| | || | | ||||| || |||||| | || | || Sbjct 24905 TCCCTTGGTATCGAGACTGCCGGCGGCATGATGACCAAGCTGATTCCTCGTAACACCACC 24964 Query 350444 GTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACA 350503 | || || || ||||| | | ||||| |||||| | || || || || | || Sbjct 24965 ATTCCCACTAAGAAGTCTGAGATCTTTTCGACATTTTCCGACAACCAACCCGGTGTCCTC 25024 Query 350504 ATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT 350563 ||||| |||| || || || || ||||| || || || || ||||| | ||| Sbjct 25025 ATTCAGGTATACGAGGGAGAGCGCCAGCGCACCAAGGACAACAACCTGCTTGGCAAGTTT 25084 Query 350564 ACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGAT 350623 || | || ||||| || |||| | || ||||| ||||| || ||| |||| || Sbjct 25085 GAGCTTACTGGCATTCCGCCTGCGCCTCGCGGTGTTCCCCAGATCGAGGTCACTTTTGAC 25144 Query 350624 ATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 ||||| | || || || | |||||| | || || ||||| Sbjct 25145 GTTGATGCTAACGGCATCATGAATGTTTCGGCCGTGGAAAA 25185 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 || ||||| |||||||| | ||| ||||||||||| || | || || || |||||||| Sbjct 24405 TCGAAATCCTCACCACCAAGATGGGTATCGCCAGCTGTCGACTTGACCTCGAATATTCCC 24346 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 || ||||| | | | |||||||| |||||||||||||| || |||||| Sbjct 24345 TCCTCAATGGTAAGGAGGGATACATCGAATGTACCACCACCTAAGTCAAAA 24295 >seq12 Length=470578 Score = 150 bits (166), Expect = 5e-31 Identities = 180/243 (74%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 || ||||||| |||||| || || || | || ||||| || | || |||||||| || Sbjct 224126 ACGAATATTTG-CATACCGCCGCGCAAACGAAGGACAAGGTGCAACGTGGACTCTTTCTG 224068 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 || || ||||| || | ||||| ||||| ||||| || || ||||||||||| || || Sbjct 224067 GATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCG 224008 Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674 || |||||||| ||||| || || || ||||| ||||| | || |||||||| || | Sbjct 224007 CTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACATTATCGATGGT 223948 Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 || || | ||| ||||| | || | ||||| || |||| ||| || ||||| || || Sbjct 223947 GTCGGACGATTCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTCACAAAGATTTG 223888 Query 140735 CAT 140737 ||| Sbjct 223887 CAT 223885 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||| || | ||| ||||| |||||||| ||||| Sbjct 224339 CCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTC 224280 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| ||||||||||| ||||| || || || || || || || ||| Sbjct 224279 AGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGA 224220 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || || ||||| | || ||||| ||||||| ||| || | ||||||| Sbjct 224219 ATGCCTTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACT 224160 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | |||| |||||||| || | || || || || || ||||| Sbjct 224159 TCCAAAGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113 Score = 86.0 bits (94), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || || ||||| ||| ||| || || || || ||||| | || | || || ||| Sbjct 137467 GCCACCAAGGATGCCGGCGTCATCGCCGGCTTGAACGTTCTCCGCATCGTCAACGAGCCC 137408 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || || || || || || || || | || || | | || | ||| ||||| | Sbjct 137407 ACGGCCGCGGCCATAGCCTACGGTTTGGACAAGACGGATGGC---GAACGGCATATTATC 137351 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | | |||| | |||||||||||||| || || || | ||| || |||| |||| || Sbjct 137350 GTGTATGATCTCGGTGGTGGTACTTTCGACGTGTCTGTGCTATCAATTGAGCAGGGCGTT 137291 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || ||||| || || |||||||| || || |||||||| ||||| || || Sbjct 137290 TTCGAAGTGCTTGCCACCGCTGGTGACACGCACCTTGGTGGTGAAGACTTCGA 137238 >seq14 Length=772799 Score = 109 bits (120), Expect = 2e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || || ||||| || | ||||| ||||||||||| || || || || ||||| Sbjct 69850 TTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATC 69909 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || ||||| ||||| |||||||| | || ||||||||||| || | ||| | ||||| Sbjct 69910 AGTCGTTGTTGATCCGGAGGAATAACCTCCTTATCCTGAATCTTGGATTTAAAGTTATCG 69969 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 |||| || || | || || || || || | || || || ||||| || || || ||| Sbjct 69970 ATCGTTTCCGACGACTCGACCTCGAGGGTGATGGTTTTGCCCGTTAGGGTCTTGACGAAA 70029 >seq11 Length=470063 Score = 95.1 bits (104), Expect = 4e-14 Identities = 194/285 (68%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || || || || || || ||||| || || || ||||| Sbjct 324958 GCCGTCATCACTGTGCCCGCTTACTTCAACGACAATCAGCGCCAGGCCACCAAGGATGCG 325017 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | ||||| || | || ||||| || ||||| ||||||||||| Sbjct 325018 GGTGCCATTGCCGGTCTCAATGTGCTGCGCATCATTAACGAGCCCACCGCTGCAGCAATC 325077 Query 349730 GCATATGGGCTTG---ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || ||||| |||| | | | ||| | || |||| |||| |||| ||| | Sbjct 325078 GCCTATGGCCTTGGCTCTGGCAAGTCGGACAAGGAGCGAAATGTTCTCATTTACGATCTT 325137 Query 349787 GGTGGTGGTACTTTTGATGTATCACTAC-TAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || |||||||| |||||||| || || | ||||| || | | || | ||| || || Sbjct 325138 GGCGGTGGTACCTTTGATGTCTCTCTGCTTAACA-TTCAGGGCGGTGTCTTTACTGTCAA 325196 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || ||||| ||||| || || || ||||| | || || ||||| Sbjct 325197 GGCCACTGCCGGTGACACGCACCTGGGTGGCCAGGACTTCGATAA 325241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243178594134