Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq69 230 3e-55 seq24 100 3e-16 >seq69 Length=174959 Score = 230 bits (254), Expect = 3e-55 Identities = 518/761 (68%), Gaps = 17/761 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACA-CG--CGTGTCCGTGAGACGT 53249 |||||||||| ||| ||||||| | || | |||| | | || || |||| || |||| Sbjct 173649 TCATGCGCGTTGCCGTGGGTAT--ATGGGG-CGACAATATCGACCGAGTCCTCGAAACGT 173593 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || || | ||| | ||| ||| || || || |||| | |||||||||||||| | Sbjct 173592 ACAACCTCATGTCCAGCAAGCTCTTCACCCATGCGTCGCCGGCGCTGTTCAACGCTGGCA 173533 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || ||| || |||| |||||||| || | |||||||||||| ||||| | Sbjct 173532 CGCCTCAGTGCCAACTGTCCTCGTGCTTCCTCGTTGACATGAAGGATGACAGCATCGAGG 173473 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 |||| ||||| ||||||||| ||| ||| ||||| ||| | | ||||| ||||| Sbjct 173472 GCATTTACGACACGCTCAAGACGTGCGCCATGATCTCTAAGATGGCCGGTGGCATCGGGC 173413 Query 53430 TCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || ||| ||| | ||||||| | |||| | || || || ||||| | | Sbjct 173412 TCAACGTGCATCGGA--TCCGTGCTACCGGCTCTTGCATTGCCGGCACCAACGGGACCTC 173355 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || || | || ||||| || ||||| |||||||||||||| |||||| ||||||| Sbjct 173354 GAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTCGACCAGGG 173295 Query 53548 TGGTGGGAAGC-GCAAGGGGTCGTTCGCCATCTACCTCGAGCC-GTGGCACGCCGACATT 53605 || |||| || ||| | | || ||||| ||||| ||||| ||||| || || | Sbjct 173294 CGGCAACAAGCGGCCAGGTG-CCTTTGCCATATACCTGGAGCCAATGGCATGCTGATGTC 173236 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | |||||||| || |||| ||| || || | || ||| | || || ||||| Sbjct 173235 TTTGAGTTTCTGGATTTGCGCAAGAACCATGGCAAGGAGGAGGTTCGAGCTCGCGACCTC 173176 Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 || ||| ||||||||||| ||||| |||||| | |||||||| ||| || ||| Sbjct 173175 TTCTTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGAAAAACGGTGATTGG 173116 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAA 53784 || |||||||| ||||| || ||||| || | | || |||||| || || ||| | Sbjct 173115 ACGCTCATGTGCCCCAACGAATGTCCCGGTCTGGCCGACTG-CTACGGCGATGAATTTGA 173057 Query 53785 CGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 | |||| | ||||| || | ||||||| | |||| ||| ||| | Sbjct 173056 GGCTCTGTACGAAAAGTACG-AGCGCGAGGGCCGTGGCCGCAAGACGGTGCGGGCTCAGA 172998 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 || | ||| || | ||||| | ||| ||| ||||| | |||| |||| |||| Sbjct 172997 AGCTGTGGTATTCTATCCTGGAAGTACAGACGGAAACGGGCAACCCGTTCATGCTGTACA 172938 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 ||||| |||| |||||||| || |||||| | ||| Sbjct 172937 AGGATCATTGCAACCGCAAGAGCAATCAAAAGAACCTGGGC 172897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 304/455 (67%), Gaps = 14/455 (3%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||||||| ||||| ||||| || ||||| || || ||| | || ||| | Sbjct 172383 GGCATACGCAACAGTCTGCTGGTGGCCCCTATGCCGACGGCCAGCACGTCGCAAATCCTT 172324 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| |||||||| |||||| |||||||||||| ||| || || || Sbjct 172323 GGCAACAACGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGACGCGTACTGGCG 172264 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || ||||| || ||||| || ||||||| ||| | | | ||| Sbjct 172263 GGCGAGTTCCAGGTGGTCAACCCCTGGCTGCTCAAGGATCTGGTCGACTTGGGCTTATGG 172204 Query 55658 -AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGG 55712 ||| ||| |||| || || | ||||||| |||||| | |||| ||| Sbjct 172203 TCGGACGC-GATGAAGAACCGAATCAT-TGCGGAA-AACGGGTCCATACAGAACATCCCC 172147 Query 55713 AGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAG 55770 | ||| | || | |||| | ||||| ||| || ||||||||| | ||| | || Sbjct 172146 AACATCCCCGCCGACGTCAAAGCACTTTACAAGACCGTCTGGGAGATTTCGCAGCGACAG 172087 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 || | | ||| || || || ||||| | ||||||||||||||||| || ||||| Sbjct 172086 -GTGGTGCAGATGGCGGCCGACCGGGGTGCTTTTATCGACCAGTCCCAGTCGCTCAACAT 172028 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTAC-GGGTGGAAGA 55889 |||| | | || || ||| ||| | | | ||||| |||||| || |||||| Sbjct 172027 TCACATGAAAGACCCGTCGATGGGCAAAATCACCAGCATGCA-TTTTACTGGTTGGAAGC 171969 Query 55890 AGGGACTCAAGA-CGGGTATGTACTATCTGCGGAC 55923 ||| ||||| | | || |||||||| ||||| || Sbjct 171968 TGGGGCTCAAAACCCGGCATGTACTACCTGCGTAC 171934 >seq24 Length=328731 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| ||| | |||||||||| || | ||| || ||||| | | |||| Sbjct 173792 GCAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCA 173733 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||| | ||| ||||||| |||| |||||| |||||||| Sbjct 173732 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATA 173673 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 || ||||| |||||||| || | |||||| || |||| || Sbjct 173672 CCCTCGACCGCGGCAAAGGCCACCAAGCGTTGAGCAAACGATG 173630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212046364400