Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq69 230 3e-55
seq24 100 3e-16
>seq69
Length=174959
Score = 230 bits (254), Expect = 3e-55
Identities = 518/761 (68%), Gaps = 17/761 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACA-CG--CGTGTCCGTGAGACGT 53249
|||||||||| ||| ||||||| | || | |||| | | || || |||| || ||||
Sbjct 173649 TCATGCGCGTTGCCGTGGGTAT--ATGGGG-CGACAATATCGACCGAGTCCTCGAAACGT 173593
Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| || | ||| | ||| ||| || || || |||| | |||||||||||||| |
Sbjct 173592 ACAACCTCATGTCCAGCAAGCTCTTCACCCATGCGTCGCCGGCGCTGTTCAACGCTGGCA 173533
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
|| ||| || |||| |||||||| || | |||||||||||| ||||| |
Sbjct 173532 CGCCTCAGTGCCAACTGTCCTCGTGCTTCCTCGTTGACATGAAGGATGACAGCATCGAGG 173473
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
|||| ||||| ||||||||| ||| ||| ||||| ||| | | ||||| |||||
Sbjct 173472 GCATTTACGACACGCTCAAGACGTGCGCCATGATCTCTAAGATGGCCGGTGGCATCGGGC 173413
Query 53430 TCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || ||| ||| | ||||||| | |||| | || || || ||||| | |
Sbjct 173412 TCAACGTGCATCGGA--TCCGTGCTACCGGCTCTTGCATTGCCGGCACCAACGGGACCTC 173355
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| || || | || ||||| || ||||| |||||||||||||| |||||| |||||||
Sbjct 173354 GAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTCGACCAGGG 173295
Query 53548 TGGTGGGAAGC-GCAAGGGGTCGTTCGCCATCTACCTCGAGCC-GTGGCACGCCGACATT 53605
|| |||| || ||| | | || ||||| ||||| ||||| ||||| || || |
Sbjct 173294 CGGCAACAAGCGGCCAGGTG-CCTTTGCCATATACCTGGAGCCAATGGCATGCTGATGTC 173236
Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665
| |||||||| || |||| ||| || || | || ||| | || || |||||
Sbjct 173235 TTTGAGTTTCTGGATTTGCGCAAGAACCATGGCAAGGAGGAGGTTCGAGCTCGCGACCTC 173176
Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725
|| ||| ||||||||||| ||||| |||||| | |||||||| ||| || |||
Sbjct 173175 TTCTTAGCCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGAAAAACGGTGATTGG 173116
Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAA 53784
|| |||||||| ||||| || ||||| || | | || |||||| || || ||| |
Sbjct 173115 ACGCTCATGTGCCCCAACGAATGTCCCGGTCTGGCCGACTG-CTACGGCGATGAATTTGA 173057
Query 53785 CGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843
| |||| | ||||| || | ||||||| | |||| ||| ||| |
Sbjct 173056 GGCTCTGTACGAAAAGTACG-AGCGCGAGGGCCGTGGCCGCAAGACGGTGCGGGCTCAGA 172998
Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903
|| | ||| || | ||||| | ||| ||| ||||| | |||| |||| ||||
Sbjct 172997 AGCTGTGGTATTCTATCCTGGAAGTACAGACGGAAACGGGCAACCCGTTCATGCTGTACA 172938
Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
||||| |||| |||||||| || |||||| | |||
Sbjct 172937 AGGATCATTGCAACCGCAAGAGCAATCAAAAGAACCTGGGC 172897
Score = 98.7 bits (108), Expect = 1e-15
Identities = 304/455 (67%), Gaps = 14/455 (3%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| |||||||| ||||| ||||| || ||||| || || ||| | || ||| |
Sbjct 172383 GGCATACGCAACAGTCTGCTGGTGGCCCCTATGCCGACGGCCAGCACGTCGCAAATCCTT 172324
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|||||||||||| |||||||| |||||| |||||||||||| ||| || || ||
Sbjct 172323 GGCAACAACGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGACGCGTACTGGCG 172264
Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657
|| ||||| || ||||| || ||||||| ||| | | | |||
Sbjct 172263 GGCGAGTTCCAGGTGGTCAACCCCTGGCTGCTCAAGGATCTGGTCGACTTGGGCTTATGG 172204
Query 55658 -AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGG 55712
||| ||| |||| || || | ||||||| |||||| | |||| |||
Sbjct 172203 TCGGACGC-GATGAAGAACCGAATCAT-TGCGGAA-AACGGGTCCATACAGAACATCCCC 172147
Query 55713 AGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAG 55770
| ||| | || | |||| | ||||| ||| || ||||||||| | ||| | ||
Sbjct 172146 AACATCCCCGCCGACGTCAAAGCACTTTACAAGACCGTCTGGGAGATTTCGCAGCGACAG 172087
Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830
|| | | ||| || || || ||||| | ||||||||||||||||| || |||||
Sbjct 172086 -GTGGTGCAGATGGCGGCCGACCGGGGTGCTTTTATCGACCAGTCCCAGTCGCTCAACAT 172028
Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTAC-GGGTGGAAGA 55889
|||| | | || || ||| ||| | | | ||||| |||||| || ||||||
Sbjct 172027 TCACATGAAAGACCCGTCGATGGGCAAAATCACCAGCATGCA-TTTTACTGGTTGGAAGC 171969
Query 55890 AGGGACTCAAGA-CGGGTATGTACTATCTGCGGAC 55923
||| ||||| | | || |||||||| ||||| ||
Sbjct 171968 TGGGGCTCAAAACCCGGCATGTACTACCTGCGTAC 171934
>seq24
Length=328731
Score = 100 bits (110), Expect = 3e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810
||||| ||| ||| | |||||||||| || | ||| || ||||| | | ||||
Sbjct 173792 GCAAAGTCCGTGTGCAAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCA 173733
Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870
||||| || ||||||||||| | ||| ||||||| |||| |||||| ||||||||
Sbjct 173732 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATA 173673
Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913
|| ||||| |||||||| || | |||||| || |||| ||
Sbjct 173672 CCCTCGACCGCGGCAAAGGCCACCAAGCGTTGAGCAAACGATG 173630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212046364400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |