Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq69 271 9e-68 seq70 174 2e-38 seq12 140 4e-28 seq17 95.1 1e-14 >seq69 Length=174959 Score = 271 bits (300), Expect = 9e-68 Identities = 927/1424 (65%), Gaps = 47/1424 (3%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| ||||| || ||| ||| | || | ||| | ||||||||||| || |||| Sbjct 172256 AACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 172315 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || ||||| || | |||||| ||||||||||| ||| | |||| ||| || Sbjct 172316 TTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCAGACTGTTG 172375 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCC--AACGC 80533 || | ||| | || |||||| | ||| || | | ||| | | | || || Sbjct 172376 CGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCCAGAGCTCTGAAGGC 172435 Query 80534 TGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGT 80591 | | ||| |||||| || ||| | | |||||||||||| || || || |||| Sbjct 172436 T-TCACCTTCCACATATCAAACTGGAGCACGCCCTCCGACGCAGGCGATCCTTTAAACGA 172494 Query 80592 CTCGTACGGGCCCTCCG-TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAA 80650 | ||| ||||||| || |||| |||||||| || | | | || ||||| || | Sbjct 172495 CGAGTA-GGGCCCTTCGCTCTTTGCCAGCTCCATTGAGGCAGTCAACGCGGCGTGGTAGA 172553 Query 80651 TGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 || ||| || | || ||| | | || |||| || || |||| || || | Sbjct 172554 TGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGA 172613 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 || || | |||||||||||||| || || | | ||||| ||||||||| ||| Sbjct 172614 GAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAATCGGTCGGTGGCGCATGT 172673 Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830 | | |||||| || ||||||| ||| ||||||| | || ||||| | Sbjct 172674 TGCTGTTTTGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTAC 172733 Query 80831 GTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCT 80884 | || ||| | || || || || || ||||| |||||| | |||| | Sbjct 172734 GGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGGTCATAGT 172793 Query 80885 TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG 80944 || || || || ||| || || ||||||||||| || || || || |||| | | Sbjct 172794 CGACGAAGGCAGGCAGGGCTAGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAG 172853 Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004 |||| |||||||||||||| | || ||| | ||| || |||||||| || || | Sbjct 172854 AGTACTCAACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGAT 172913 Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064 | |||| ||||||| |||||||| |||| ||||| | || || || |||| Sbjct 172914 TGCTCTTGCGGTTGCAATGATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGT- 172972 Query 81065 ACTTG-AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 |||| ||||| | | ||| | || | ||| ||| ||||||| ||| ||| Sbjct 172973 ACTTCCAGGATAGAATACCACAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCG 173032 Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGG 81182 | | ||||| |||| | || || | | |||| | ||| | | || | || Sbjct 173033 CGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCGCCGTAGCAGT-CGGCCAGACCGGG 173091 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 || ||||| |||||||| || ||| || || ||||| || ||||||||| Sbjct 173092 ACATTCGTTGGGGCACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAG 173151 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGG 81300 ||| || ||||| ||||| ||| |||||||| ||| || ||||||| | || ||| Sbjct 173152 GTCGGGAATCCACAGGGCTAAGAAGAGGTCGCG--AGCTCGAACCTCCTCCTTGCCATGG 173209 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCAT-GGCTCCAGATACACGGC 81359 || |||||| || ||||| || | || || ||||||||| |||||||| || | ||| Sbjct 173210 TTCTTGCGCAAATCCAGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGC 173269 Query 81360 GATCGACCCCTTGCGACG----GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | | | ||| || | ||| ||||||| |||||| ||||| || |||||| | Sbjct 173270 AAAGG-CACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGA 173328 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 |||| | ||| || |||| ||| | || ||||| || || | || | || || Sbjct 173329 CACGAAGCATGGGAATGACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGG 173388 Query 81476 TGGCGCGCACCT--TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533 | || || | | ||| |||| | ||||||||||| | | ||| || ||| || Sbjct 173389 TAGCACGGATCCGATGCACGTTGA--GCCCGATGCCACCGGCCATCTTAGAGATCATGGC 173446 Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC-------AA 81586 ||| || | || || ||||| ||||||||||| || | |||||||| || Sbjct 173447 GCACGTCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAACGAGGAA 173506 Query 81587 GCAAGA-AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTC 81645 ||| || |||| ||| || |||||| | ||| || |||||||| | || | | Sbjct 173507 GCACGAGGACAG-TTGGCA-CTGAGG------CGTGCCAGCGTTGAACAGCGCCGGCGAC 173558 Query 81646 GCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCG 81705 || || |||| | | ||||| |||| || ||||| ||| || |||| | Sbjct 173559 GCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTG 173618 Query 81706 TCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 || || ||||| | || || ||||| | ||||| ||||| Sbjct 173619 TCGCCCCATATACCCACGGCAACGCGCATGATCATGTGTTGGGG 173662 >seq70 Length=137430 Score = 174 bits (192), Expect = 2e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || || ||||| || ||||||||||| ||||| | Sbjct 82753 ATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCTTCT 82812 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 82813 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 82872 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| ||||| |||| || ||||| ||| |||||||| Sbjct 82873 CAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGC-GACTATAA 82931 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||| || || ||| |||| || |||||||| Sbjct 82932 CATACAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTGCGCGGTGG 82979 >seq12 Length=470578 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || |||||||| || ||| | || || || || Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | ||||| |||||||||||||| ||||| || || || Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || ||||||| || || || | || || || Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| | || || ||| | ||| | ||||| || Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGG 224111 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || || ||||| ||||| | | | |||| || | ||| | Sbjct 223681 ACTGGAAAGACGATCACCCTAGAGGTAGAGTCCTCTAACACTATTGATAACGTCAAGTCC 223740 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| |||||||| || || || || | || ||||| || || Sbjct 223741 AAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAACGCTTGATCTTTGCCGGAAAA 223800 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | ||||||| | ||| | | ||||| || | || ||||| || || || ||| Sbjct 223801 CAGTTGGAGGATGGCAGGACCTTGTCCGACTACAACATTCAGAAGGAGTCTACACTACAT 223860 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| |||| | ||||| || Sbjct 223861 CTTGTCCTGCGCTTGCGCGGCGG 223883 >seq17 Length=377200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 231/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCG-CACGAGTGCACGCTTATTAT 31268 ||||||| ||| || || | ||| || ||| | | || | || || || || || || | Sbjct 99442 AAGCTCGTCGAGGCTAATTTGGCGGGCACCAA-ACGTGGACATGAATGTACACTGATCTT 99384 Query 31269 TACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAA 31328 ||||| || |||||||| |||| || ||| | | || | | | ||| | | Sbjct 99383 AACCGAAGGCGACTCGGCCAAGGGTCTGGCTGTGTCCGGGCGAAATATCTTGGACCCTGA 99324 Query 31329 TGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAA 31388 | | || || || ||||| |||||||||| || ||||| || || ||||| || | Sbjct 99323 CCGGATTGGCGTCTTCCCGCTTCGAGGCAAGCTGCTCAACGTCCGAGATGCCTCGGTCGA 99264 Query 31389 ACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG- 31447 ||| | || | || ||||| | ||| | || | |||| ||||| |||| Sbjct 99263 TCAGATCACCAAGAACCAAGAGATCCAAAACATCAAGCAATTCCTGGGGCTCAAGCACAA 99204 Query 31448 GCAAGGTATATAATT-CACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGAC 31506 ||||| |||||| | |||| |||| | || || |||| |||||||| ||| | || Sbjct 99203 GCAAG-TATATACTGACACTAAGAGCCTA-CGCTATGGTCATCTCATGATCATGGCTGAT 99146 Query 31507 GCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTCCTAAAT 31548 |||| ||||||||| ||||||||||||||| || | ||| Sbjct 99145 CAGGATCACGACGGCAGCCACATCAAGGGTCTTCTCATCAAT 99104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306279507360