Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq69 271 9e-68
seq70 174 2e-38
seq12 140 4e-28
seq17 95.1 1e-14
>seq69
Length=174959
Score = 271 bits (300), Expect = 9e-68
Identities = 927/1424 (65%), Gaps = 47/1424 (3%)
Strand=Plus/Plus
Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415
||||| ||||| || ||| ||| | || | ||| | ||||||||||| || ||||
Sbjct 172256 AACTCGCCCGCCAGTACGCGTCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 172315
Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475
||||| || ||||| || | |||||| ||||||||||| ||| | |||| ||| ||
Sbjct 172316 TTGTTGCCAAGGATTTGCGACGTGCTGGCCGTCGGCATAGGGGCCACCAGCAGACTGTTG 172375
Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCC--AACGC 80533
|| | ||| | || |||||| | ||| || | | ||| | | | || ||
Sbjct 172376 CGTATGCCATACTCCTTGATCTGCTCCCGGAGCGTTTCCCACTCCCAGAGCTCTGAAGGC 172435
Query 80534 TGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGT 80591
| | ||| |||||| || ||| | | |||||||||||| || || || ||||
Sbjct 172436 T-TCACCTTCCACATATCAAACTGGAGCACGCCCTCCGACGCAGGCGATCCTTTAAACGA 172494
Query 80592 CTCGTACGGGCCCTCCG-TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAA 80650
| ||| ||||||| || |||| |||||||| || | | | || ||||| || |
Sbjct 172495 CGAGTA-GGGCCCTTCGCTCTTTGCCAGCTCCATTGAGGCAGTCAACGCGGCGTGGTAGA 172553
Query 80651 TGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710
|| ||| || | || ||| | | || |||| || || |||| || || |
Sbjct 172554 TGGTCTCGAATATTTTCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGA 172613
Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770
|| || | |||||||||||||| || || | | ||||| ||||||||| |||
Sbjct 172614 GAGCCAGAAAAGCATCAGCCAGGCCCTGGACACCAACACCAATCGGTCGGTGGCGCATGT 172673
Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830
| | |||||| || ||||||| ||| ||||||| | || ||||| |
Sbjct 172674 TGCTGTTTTGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTAC 172733
Query 80831 GTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCT 80884
| || ||| | || || || || || ||||| |||||| | |||| |
Sbjct 172734 GGACGACGACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGGTCATAGT 172793
Query 80885 TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG 80944
|| || || || ||| || || ||||||||||| || || || || |||| | |
Sbjct 172794 CGACGAAGGCAGGCAGGGCTAGCGAGGCCAGATTGCAGACAGCAACTTCATCAGGTGCAG 172853
Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004
|||| |||||||||||||| | || ||| | ||| || |||||||| || || |
Sbjct 172854 AGTACTCAACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGAT 172913
Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064
| |||| ||||||| |||||||| |||| ||||| | || || || ||||
Sbjct 172914 TGCTCTTGCGGTTGCAATGATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGT- 172972
Query 81065 ACTTG-AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123
|||| ||||| | | ||| | || | ||| ||| ||||||| ||| |||
Sbjct 172973 ACTTCCAGGATAGAATACCACAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCG 173032
Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGG 81182
| | ||||| |||| | || || | | |||| | ||| | | || | ||
Sbjct 173033 CGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCGCCGTAGCAGT-CGGCCAGACCGGG 173091
Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242
|| ||||| |||||||| || ||| || || ||||| || |||||||||
Sbjct 173092 ACATTCGTTGGGGCACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAG 173151
Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGG 81300
||| || ||||| ||||| ||| |||||||| ||| || ||||||| | || |||
Sbjct 173152 GTCGGGAATCCACAGGGCTAAGAAGAGGTCGCG--AGCTCGAACCTCCTCCTTGCCATGG 173209
Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCAT-GGCTCCAGATACACGGC 81359
|| |||||| || ||||| || | || || ||||||||| |||||||| || | |||
Sbjct 173210 TTCTTGCGCAAATCCAGAAACTCAAAGACATCAGCATGCCATTGGCTCCAGGTATATGGC 173269
Query 81360 GATCGACCCCTTGCGACG----GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415
| | | ||| || | ||| ||||||| |||||| ||||| || |||||| |
Sbjct 173270 AAAGG-CACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTAAAGA 173328
Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475
|||| | ||| || |||| ||| | || ||||| || || | || | || ||
Sbjct 173329 CACGAAGCATGGGAATGACACCGTTCGAGGTCCCGTTGGTGCCGGCAATGCAAGAGCCGG 173388
Query 81476 TGGCGCGCACCT--TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533
| || || | | ||| |||| | ||||||||||| | | ||| || ||| ||
Sbjct 173389 TAGCACGGATCCGATGCACGTTGA--GCCCGATGCCACCGGCCATCTTAGAGATCATGGC 173446
Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC-------AA 81586
||| || | || || ||||| ||||||||||| || | |||||||| ||
Sbjct 173447 GCACGTCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCAACGAGGAA 173506
Query 81587 GCAAGA-AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTC 81645
||| || |||| ||| || |||||| | ||| || |||||||| | || | |
Sbjct 173507 GCACGAGGACAG-TTGGCA-CTGAGG------CGTGCCAGCGTTGAACAGCGCCGGCGAC 173558
Query 81646 GCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCG 81705
|| || |||| | | ||||| |||| || ||||| ||| || |||| |
Sbjct 173559 GCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACGTTTCGAGGACTCGGTCGATATTG 173618
Query 81706 TCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749
|| || ||||| | || || ||||| | ||||| |||||
Sbjct 173619 TCGCCCCATATACCCACGGCAACGCGCATGATCATGTGTTGGGG 173662
>seq70
Length=137430
Score = 174 bits (192), Expect = 2e-38
Identities = 177/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||| || || || || ||||| || ||||||||||| ||||| |
Sbjct 82753 ATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCTTCT 82812
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || ||||||||||||||||| ||||| || ||||||
Sbjct 82813 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 82872
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || ||||| || ||||| ||||| |||| || ||||| ||| ||||||||
Sbjct 82873 CAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGC-GACTATAA 82931
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| |||||| || || ||| |||| || ||||||||
Sbjct 82932 CATACAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTGCGCGGTGG 82979
>seq12
Length=470578
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| | || |||||||| || ||| | || || || ||
Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| ||||| | ||||| |||||||||||||| ||||| || || ||
Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAA 224004
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| || ||||||| || || || | || || ||
Sbjct 224005 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAAC 224064
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| | || || ||| | ||| | ||||| ||
Sbjct 224065 ATCCAGAAAGAGTCCACGTTGCACCTTGTCCTTCGTTTGCGCGGCGG 224111
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || || || ||||| ||||| | | | |||| || | ||| |
Sbjct 223681 ACTGGAAAGACGATCACCCTAGAGGTAGAGTCCTCTAACACTATTGATAACGTCAAGTCC 223740
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| |||||||| || || || || | || ||||| || ||
Sbjct 223741 AAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAACGCTTGATCTTTGCCGGAAAA 223800
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| | ||||||| | ||| | | ||||| || | || ||||| || || || |||
Sbjct 223801 CAGTTGGAGGATGGCAGGACCTTGTCCGACTACAACATTCAGAAGGAGTCTACACTACAT 223860
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| |||| | ||||| ||
Sbjct 223861 CTTGTCCTGCGCTTGCGCGGCGG 223883
>seq17
Length=377200
Score = 95.1 bits (104), Expect = 1e-14
Identities = 231/342 (68%), Gaps = 6/342 (2%)
Strand=Plus/Minus
Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCG-CACGAGTGCACGCTTATTAT 31268
||||||| ||| || || | ||| || ||| | | || | || || || || || || |
Sbjct 99442 AAGCTCGTCGAGGCTAATTTGGCGGGCACCAA-ACGTGGACATGAATGTACACTGATCTT 99384
Query 31269 TACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAA 31328
||||| || |||||||| |||| || ||| | | || | | | ||| | |
Sbjct 99383 AACCGAAGGCGACTCGGCCAAGGGTCTGGCTGTGTCCGGGCGAAATATCTTGGACCCTGA 99324
Query 31329 TGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAA 31388
| | || || || ||||| |||||||||| || ||||| || || ||||| || |
Sbjct 99323 CCGGATTGGCGTCTTCCCGCTTCGAGGCAAGCTGCTCAACGTCCGAGATGCCTCGGTCGA 99264
Query 31389 ACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG- 31447
||| | || | || ||||| | ||| | || | |||| ||||| ||||
Sbjct 99263 TCAGATCACCAAGAACCAAGAGATCCAAAACATCAAGCAATTCCTGGGGCTCAAGCACAA 99204
Query 31448 GCAAGGTATATAATT-CACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGAC 31506
||||| |||||| | |||| |||| | || || |||| |||||||| ||| | ||
Sbjct 99203 GCAAG-TATATACTGACACTAAGAGCCTA-CGCTATGGTCATCTCATGATCATGGCTGAT 99146
Query 31507 GCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTCCTAAAT 31548
|||| ||||||||| ||||||||||||||| || | |||
Sbjct 99145 CAGGATCACGACGGCAGCCACATCAAGGGTCTTCTCATCAAT 99104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306279507360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |