Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq53 102 7e-17 >seq53 Length=178968 Score = 102 bits (112), Expect = 7e-17 Identities = 276/410 (67%), Gaps = 28/410 (7%) Strand=Plus/Minus Query 30061 CACGTAAAACTGA-CA--CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||| |||||| || |||| ||||| || || | |||||||| |||||| || Sbjct 126443 CACGTAGAACTGAGCAAGCATG---TGGCAGGGCGGCAAAGCCATGATCTTCAAGTCCTT 126387 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 30174 ||||||||| || ||| ||||||||||| ||| | || |||||| | || || Sbjct 126386 GGGGTTCCATGCAGACAAGATGATGCGCCGGTCGTACGGCATGTTCCGCAACTTGTGGAT 126327 Query 30175 CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGT 30233 ||| || || ||||| || || ||| | | |||||| ||| | ||| || Sbjct 126326 GACGTCG----GCAAGCTGGTCGACGCCCTGGTCGGTGTAGTCGGCCTTGGCATCCACGT 126271 Query 30234 ACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 30293 ||| ||||| ||||||| |||||| || || || || ||||||||||| || | || | Sbjct 126270 ACTGAGCTCCAAAATGCCGCCACTGAAAGCCATATACGGGTCCCAGGTCACCGACCTCGC 126211 Query 30294 TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30353 ||| || || |||| | || || | || |||||| | ||||| ||||| | Sbjct 126210 GATGCGAGAGACCGACGCTGTCAAGGAACTCGCGAGAGCCGTTGCCATCCCAAATCTTGA 126151 Query 30354 CCCC--CTT--CTCAGAG--AGCTCTTTGGAG-TTTGTGGACCCTCTGACGAACCACAGC 30406 | || | | ||||| | ||| | || ||| | ||||| || |||||| ||| Sbjct 126150 CGCCTGCGTCGCTCAGCGCAAGC-----GAAGACGTGTTG-CCCTC-GATGAACCAAAGC 126098 Query 30407 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | ||| | | ||||||||| ||||| | ||| || || || || || Sbjct 126097 AACTCGGCAATGACGGCCTTGAGGAAGACGCGCTTCGTTGTAAGAAGCGG 126048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406307537797176