Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq70 91.5 9e-14 seq12 91.5 9e-14 >seq70 Length=137430 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| || | || |||||||||||||| || |||||||| || Sbjct 82981 CGCCACCGCGCAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGC 82922 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || ||||| | ||||| || || || |||||||| || | ||||| ||||| || | Sbjct 82921 TCAGGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGG 82862 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| ||| || | || ||| | || ||||| |||| Sbjct 82861 GAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCC 82803 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | || || || || || || | ||||| ||||| |||||||| ||| Sbjct 82802 ACCTCAAGAGTGATTGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCATCTTG 82749 >seq12 Length=470578 Score = 91.5 bits (100), Expect = 9e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||| | || | |||||| || || ||||| || ||||| Sbjct 224339 CCACCACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTC 224280 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| |||||||| ||||||||||| | ||||||||||| || || Sbjct 224279 AGAGTACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGA 224220 Query 34600 ACTCCCTCCTTGTCT 34614 | || ||||||||| Sbjct 224219 ATGCCTTCCTTGTCT 224205 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| || || ||||| ||||| || || ||||| | || ||||| || || || ||||| Sbjct 224076 CTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAA 224017 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||||| || || || | ||||||||||| ||| ||| | || || Sbjct 224016 GATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGGAT-TTTCGACTTCACAT 223958 Query 34635 TA-AAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 || || ||||| || | || ||||||| || ||||| || || ||||| || ||| Sbjct 223957 TATCGATGGTGTCGGACGAT-TCGACTTCCAAAGTGATCGTCTTGCCAGTTAATGTCTTC 223899 Query 34693 ACAAAAATCTGCAT 34706 ||||| || ||||| Sbjct 223898 ACAAAGATTTGCAT 223885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727382926674