Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 170 4e-37 seq70 167 5e-36 seq14 138 3e-27 seq69 86.0 1e-11 >seq12 Length=470578 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| | ||||||||||| |||||||| ||||| | || || | ||||| Sbjct 224096 AGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCC 224037 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| ||||| ||||| |||| || ||||||||| Sbjct 224036 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCC 223977 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || ||||||||||| || ||| || || | |||||||||| Sbjct 223976 TGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTC 223917 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | ||||| Sbjct 223916 TTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || ||||| || || ||||| || || | | |||||| ||||| Sbjct 223868 AGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTCCTGCCATCC 223809 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | ||||||||| || ||||||| || ||||||||| Sbjct 223808 TCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGGAATACCCTCCTTGTCC 223749 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || |||| |||| || ||||| || ||||||||| Sbjct 223748 TGGATCTTGGACTTGACGTTATCAATAGTGTTAGAGGACTCTACCTCTAGGGTGATCGTC 223689 Query 211083 TTTCCCGTGA 211092 ||||| |||| Sbjct 223688 TTTCCAGTGA 223679 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| | |||| ||||| || || || ||||| || || Sbjct 224334 ACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTCAGAGT 224275 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| || || || || || || ||||| |||||||| || |||| || Sbjct 224274 ACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCC 224215 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || ||||| || || || || || || |||||| || | Sbjct 224214 TTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCAA 224155 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||||||||| | |||||| || || | ||||| Sbjct 224154 AGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113 >seq70 Length=137430 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||| ||| || || |||||||| || ||||| | |||||| Sbjct 82964 AGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCT 82905 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 82904 TCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 82845 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||||||||| || ||||| |||||||| ||| Sbjct 82844 TGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTC 82785 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||| || Sbjct 82784 TTCCCTGTGAGGGTTTTGACAAAGATCTGCATCTT 82750 >seq14 Length=772799 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| ||||| | ||||| | |||||||| ||||||||||| |||||||| Sbjct 69850 TTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATC 69909 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || |||||||| || ||||||| | ||||| ||||| ||||| ||| | ||| ||| Sbjct 69910 AGTCGTTGTTGATCCGGAGGAATAACCTCCTTATCCTGAATCTTGGATTTAAAGTTATCG 69969 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || || |||||||| ||||| || || ||||| || ||||| || || Sbjct 69970 ATCGTTTCCGACGACTCGACCTCGAGGGTGATGGTTTTGCCCGTTAGGGTCTTGACGAA 70028 >seq69 Length=174959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 207/310 (67%), Gaps = 14/310 (5%) Strand=Plus/Plus Query 178063 GCAAAGGTTCAAA----GAATGAGGCATTCCAAAGTTCTTTTGGTTGCTCTTTC---TGC 178115 |||||||||| || ||||| || | | ||||||||| |||||||| | ||| Sbjct 172873 GCAAAGGTTCGAACTCCGAATGGTGC----CCAGGTTCTTTTGATTGCTCTTGCGGTTGC 172928 Query 178116 AAATGGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGT 178175 || || ||| |||||| ||||| || | ||| || | || | | || || Sbjct 172929 AA-TG--ATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAG 172985 Query 178176 GATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTT 178235 || ||| |||| ||| || || || ||||| | | || || ||||||||||| Sbjct 172986 AATACCACAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTT 173045 Query 178236 TGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGC 178295 ||| || |||| ||||| || ||| || | ||||||||| || ||||||| Sbjct 173046 CGTACAGAGCCTCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGC 173105 Query 178296 AGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355 | | ||| |||| | ||||| || || ||| || |||||||| ||||| | |||| | Sbjct 173106 ACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA 173165 Query 178356 TGGCATAGAA 178365 ||| |||| Sbjct 173166 GGGCTAAGAA 173175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143415754970