Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq12 170 4e-37
seq70 167 5e-36
seq14 138 3e-27
seq69 86.0 1e-11
>seq12
Length=470578
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| | ||||||||||| |||||||| ||||| | || || | |||||
Sbjct 224096 AGGACAAGGTGCAACGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCC 224037
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| ||||| ||||| ||||| |||| || |||||||||
Sbjct 224036 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCAGGGGGAATACCCTCCTTGTCC 223977
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||||| || ||||||||||| || ||| || || | ||||||||||
Sbjct 223976 TGGATTTTCGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAAAGTGATCGTC 223917
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| ||||| | |||||
Sbjct 223916 TTGCCAGTTAATGTCTTCACAAAGATTTGCAT 223885
Score = 149 bits (164), Expect = 1e-30
Identities = 147/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || || ||||| || || ||||| || || | | |||||| |||||
Sbjct 223868 AGGACAAGATGTAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTCCTGCCATCC 223809
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||| || || || ||||| | ||||||||| || ||||||| || |||||||||
Sbjct 223808 TCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGATCGGGAGGAATACCCTCCTTGTCC 223749
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || || |||| |||| || ||||| || |||||||||
Sbjct 223748 TGGATCTTGGACTTGACGTTATCAATAGTGTTAGAGGACTCTACCTCTAGGGTGATCGTC 223689
Query 211083 TTTCCCGTGA 211092
||||| ||||
Sbjct 223688 TTTCCAGTGA 223679
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || |||||||| | |||| ||||| || || || ||||| || ||
Sbjct 224334 ACGAAGACGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATATTGTAATCGCTCAGAGT 224275
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||| || || || || || || ||||| |||||||| || |||| ||
Sbjct 224274 ACGTCCATCTTCCAGTTGTTTTCCGGCAAATATGAGGCGCTGTTGGTCGGGGGGAATGCC 224215
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || || || ||||| || || || || || || |||||| || |
Sbjct 224214 TTCCTTGTCTTGTATTTTCGACTTCACATTGTCAATCGTATCCGAAGATTCAACTTCCAA 224155
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| |||||||||||||| | |||||| || || | |||||
Sbjct 224154 AGTAATCGTCTTTCCCGTCAAAGTCTTGACGAATATTTGCAT 224113
>seq70
Length=137430
Score = 167 bits (184), Expect = 5e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| |||||| ||| || || |||||||| || ||||| | ||||||
Sbjct 82964 AGGACGAGGTGCAGAGTGCTCTCCTTCTGTATGTTATAGTCGCTCAGGGTTCGGCCATCT 82905
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| ||||| || ||||| || |||| || |||||||||
Sbjct 82904 TCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 82845
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| |||||||||||||| || ||||| |||||||| |||
Sbjct 82844 TGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATTGTC 82785
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| || || ||||| | |||||| ||
Sbjct 82784 TTCCCTGTGAGGGTTTTGACAAAGATCTGCATCTT 82750
>seq14
Length=772799
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| ||||| | ||||| | |||||||| ||||||||||| ||||||||
Sbjct 69850 TTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATC 69909
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| |||||||| || ||||||| | ||||| ||||| ||||| ||| | ||| |||
Sbjct 69910 AGTCGTTGTTGATCCGGAGGAATAACCTCCTTATCCTGAATCTTGGATTTAAAGTTATCG 69969
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || || || || |||||||| ||||| || || ||||| || ||||| || ||
Sbjct 69970 ATCGTTTCCGACGACTCGACCTCGAGGGTGATGGTTTTGCCCGTTAGGGTCTTGACGAA 70028
>seq69
Length=174959
Score = 86.0 bits (94), Expect = 1e-11
Identities = 207/310 (67%), Gaps = 14/310 (5%)
Strand=Plus/Plus
Query 178063 GCAAAGGTTCAAA----GAATGAGGCATTCCAAAGTTCTTTTGGTTGCTCTTTC---TGC 178115
|||||||||| || ||||| || | | ||||||||| |||||||| | |||
Sbjct 172873 GCAAAGGTTCGAACTCCGAATGGTGC----CCAGGTTCTTTTGATTGCTCTTGCGGTTGC 172928
Query 178116 AAATGGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGT 178175
|| || ||| |||||| ||||| || | ||| || | || | | || ||
Sbjct 172929 AA-TG--ATCCTTGTACAGCATGAACGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAG 172985
Query 178176 GATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTT 178235
|| ||| |||| ||| || || || ||||| | | || || |||||||||||
Sbjct 172986 AATACCACAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTT 173045
Query 178236 TGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGC 178295
||| || |||| ||||| || ||| || | ||||||||| || |||||||
Sbjct 173046 CGTACAGAGCCTCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGC 173105
Query 178296 AGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355
| | ||| |||| | ||||| || || ||| || |||||||| ||||| | |||| |
Sbjct 173106 ACATGAGCGTCCAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA 173165
Query 178356 TGGCATAGAA 178365
||| ||||
Sbjct 173166 GGGCTAAGAA 173175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159143415754970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |