Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq12 123 2e-23
seq14 86.0 4e-12
seq70 82.4 5e-11
>seq12
Length=470578
Score = 123 bits (136), Expect = 2e-23
Identities = 144/192 (75%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || | |||||||| ||||| ||| | |||||||| || ||
Sbjct 224113 ATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCG 224172
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | |||| | ||||| ||||| | || || || ||
Sbjct 224173 GATACGATTGACAATGTGAAGTCGAAAA-TACAAGACAAGGAAGGCATTCCCCCCGACCA 224231
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | ||||||||||| |||||||||||||| | ||| ||| | ||||||||||
Sbjct 224232 ACAGCGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAA 224291
Query 23790 CATACAAAAAGA 23801
|| || |||||
Sbjct 224292 TATTCAGAAAGA 224303
Score = 95.1 bits (104), Expect = 8e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || | || || || ||||||||| | ||||| || || |
Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | |||| | ||||| || ||| | || || |||||
Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAA-TCCAGGACAAGGAGGGTATTCCCCCTGATCA 224003
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||| ||||| || || || || | || ||| | |||||||||
Sbjct 224004 ACAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAA 224063
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| || ||||||||||| || ||
Sbjct 224064 CATCCAGAAAGAGTCCACGTTGCA 224087
>seq14
Length=772799
Score = 86.0 bits (94), Expect = 4e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678
|||||| || ||||| ||||| ||||| ||||| ||||| || || || |||| || |
Sbjct 70029 TTTCGTCAAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGAT 69970
Query 23679 TGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| | || ||| || ||| || || || | | | || || |||||||| || |
Sbjct 69969 CGATAACTTTAAATCCAAGATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACT 69910
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || |||||||| || || ||||| | || || | |||||||||||| |||||
Sbjct 69909 GATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAA 69850
>seq70
Length=137430
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||||||||| || || || |||||||| || || || ||
Sbjct 82750 AAGATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCT 82809
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || ||| ||||| || || | || || ||
Sbjct 82810 TCTGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 82869
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||||| | || |||||||| || || || ||||| | || || | |||| ||
Sbjct 82870 CAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGCGACTAT 82929
Query 23788 AACATACAAAAAGAG 23802
|||||||| || |||
Sbjct 82930 AACATACAGAAGGAG 82944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007218933624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |