Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12 123 2e-23 seq14 86.0 4e-12 seq70 82.4 5e-11 >seq12 Length=470578 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | |||||||| ||||| ||| | |||||||| || || Sbjct 224113 ATGCAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCG 224172 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| | ||||| ||||| | || || || || Sbjct 224173 GATACGATTGACAATGTGAAGTCGAAAA-TACAAGACAAGGAAGGCATTCCCCCCGACCA 224231 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | ||||||||||| |||||||||||||| | ||| ||| | |||||||||| Sbjct 224232 ACAGCGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAA 224291 Query 23790 CATACAAAAAGA 23801 || || ||||| Sbjct 224292 TATTCAGAAAGA 224303 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || ||||||||| | ||||| || || | Sbjct 223885 ATGCAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCC 223944 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| | ||||| || ||| | || || ||||| Sbjct 223945 GACACCATCGATAATGTGAAGTCGAAAA-TCCAGGACAAGGAGGGTATTCCCCCTGATCA 224003 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | || ||| | ||||||||| Sbjct 224004 ACAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAA 224063 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || ||||||||||| || || Sbjct 224064 CATCCAGAAAGAGTCCACGTTGCA 224087 >seq14 Length=772799 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678 |||||| || ||||| ||||| ||||| ||||| ||||| || || || |||| || | Sbjct 70029 TTTCGTCAAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGAT 69970 Query 23679 TGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || | || ||| || ||| || || || | | | || || |||||||| || | Sbjct 69969 CGATAACTTTAAATCCAAGATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACT 69910 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || |||||||| || || ||||| | || || | |||||||||||| ||||| Sbjct 69909 GATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAA 69850 >seq70 Length=137430 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||||||||| || || || |||||||| || || || || Sbjct 82750 AAGATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCT 82809 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || ||| ||||| || || | || || || Sbjct 82810 TCTGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 82869 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || |||||||| || || || ||||| | || || | |||| || Sbjct 82870 CAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGCGACTAT 82929 Query 23788 AACATACAAAAAGAG 23802 |||||||| || ||| Sbjct 82930 AACATACAGAAGGAG 82944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007218933624