Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq24 138 1e-27
>seq24
Length=328731
Score = 138 bits (152), Expect = 1e-27
Identities = 340/505 (67%), Gaps = 12/505 (2%)
Strand=Plus/Minus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|| ||||||||||| || || |||||||| ||| ||| || |||||||| ||||||||
Sbjct 174071 ACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCCATGAAATCAAAG 174012
Query 4332 GGATTAGTTGCGTTGTA-ATGTTTT--TCACACTTTAGAGCTACAAGCAATCGGTCAGCT 4388
||||| | | |||| || |||| | | | || || || || | ||||| ||
Sbjct 174011 GGATTTGACGACCTGTACATCTTTTCGTTGCCC---AGTGCGACGAGAAGGCGGTCGGCA 173955
Query 4389 ACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAATTCCAATTAATCTCACAGGT-A 4446
|| || || |||||||| |||| | | | || ||| || |||| |||| | |||| |
Sbjct 173954 ACGAACTCGATATACTGCTTCATCAAGGTAGC-GTTCATGCCAAGTAATG-CGCAGGGCA 173897
Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTT 4506
| || | || | ||| |||||||| || | ||||| || ||||| || || | ||
Sbjct 173896 GGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATGTCATAGATGA 173837
Query 4507 TATCTTTAGATGGTTTATTTACTAAGTATCCAAA-CAATAAACACGCAAAATCACAATGC 4565
| ||| | ||| || | || | | || | ||| ||||| || |||
Sbjct 173836 CCTGTTT-GCTGGCCCGGTTTTTGAGGTGCGAGTGCAGGAGACATGCAAAGTCCGTGTGC 173778
Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625
|||||||| |||| ||| |||||||| ||||| || || || ||||| | || | |
Sbjct 173777 AAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGGCATGAGGCCACGC 173718
Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685
|| || ||||| || || | |||||| | ||| |||||| || || || || ||||||
Sbjct 173717 TTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATACCCTCGACCGCGGCA 173658
Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745
|| || || || || | ||||| | |||||| | ||||| || ||||||
Sbjct 173657 AAGGCCACCAAGCGTTGAGCAAACGATGAGTTTTTGTCCTGGATCCAGCGTATAGCCCAG 173598
Query 4746 TTAGCTTTTTTCTTAACGCACGGAA 4770
| || ||||| || ||| ||||
Sbjct 173597 TCGGCCTTTTTGCGAATGCAAGGAA 173573
Score = 98.7 bits (108), Expect = 8e-16
Identities = 198/292 (68%), Gaps = 4/292 (1%)
Strand=Plus/Minus
Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872
||||| |||| || || || || ||| || | || || || || || || || ||
Sbjct 173463 CTTGA-TATAGGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAA 173405
Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932
||||||||||||| ||||| | || || | | ||||| ||| | || | || |
Sbjct 173404 TCTGAAATCCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAA 173345
Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992
| |||||||| || || || ||||| ||| || ||||| |||| | || || | ||
Sbjct 173344 CCAAGTTTTCATTGACGATGCCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAA 173285
Query 4993 AGTACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049
| |||| ||||||| || | | || ||||||| |||| || || | | ||| |
Sbjct 173284 AATACTTTTCGTCATCATTCAGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTA 173225
Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101
||| || | |||||||| || || || || || |||||||| ||||||
Sbjct 173224 TTTCCTCGGCTGTCCAAAATGAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427046591702474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |