Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24 138 1e-27 >seq24 Length=328731 Score = 138 bits (152), Expect = 1e-27 Identities = 340/505 (67%), Gaps = 12/505 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||||||||| || || |||||||| ||| ||| || |||||||| |||||||| Sbjct 174071 ACCCGCTTTTCGAAAAAGTTGGTTTTGCCCCCTAGCGATATGTTTTCCATGAAATCAAAG 174012 Query 4332 GGATTAGTTGCGTTGTA-ATGTTTT--TCACACTTTAGAGCTACAAGCAATCGGTCAGCT 4388 ||||| | | |||| || |||| | | | || || || || | ||||| || Sbjct 174011 GGATTTGACGACCTGTACATCTTTTCGTTGCCC---AGTGCGACGAGAAGGCGGTCGGCA 173955 Query 4389 ACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAATTCCAATTAATCTCACAGGT-A 4446 || || || |||||||| |||| | | | || ||| || |||| |||| | |||| | Sbjct 173954 ACGAACTCGATATACTGCTTCATCAAGGTAGC-GTTCATGCCAAGTAATG-CGCAGGGCA 173897 Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTT 4506 | || | || | ||| |||||||| || | ||||| || ||||| || || | || Sbjct 173896 GGGCTTCGGTTAGAAATTCTTGTTCGATGGCGACGGCATCGGTGATGATGTCATAGATGA 173837 Query 4507 TATCTTTAGATGGTTTATTTACTAAGTATCCAAA-CAATAAACACGCAAAATCACAATGC 4565 | ||| | ||| || | || | | || | ||| ||||| || ||| Sbjct 173836 CCTGTTT-GCTGGCCCGGTTTTTGAGGTGCGAGTGCAGGAGACATGCAAAGTCCGTGTGC 173778 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 |||||||| |||| ||| |||||||| ||||| || || || ||||| | || | | Sbjct 173777 AAACCTTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGGCATGAGGCCACGC 173718 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || ||||| || || | |||||| | ||| |||||| || || || || |||||| Sbjct 173717 TTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTAAAGAAGATACCCTCGACCGCGGCA 173658 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 || || || || || | ||||| | |||||| | ||||| || |||||| Sbjct 173657 AAGGCCACCAAGCGTTGAGCAAACGATGAGTTTTTGTCCTGGATCCAGCGTATAGCCCAG 173598 Query 4746 TTAGCTTTTTTCTTAACGCACGGAA 4770 | || ||||| || ||| |||| Sbjct 173597 TCGGCCTTTTTGCGAATGCAAGGAA 173573 Score = 98.7 bits (108), Expect = 8e-16 Identities = 198/292 (68%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 ||||| |||| || || || || ||| || | || || || || || || || || Sbjct 173463 CTTGA-TATAGGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAA 173405 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 ||||||||||||| ||||| | || || | | ||||| ||| | || | || | Sbjct 173404 TCTGAAATCCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAA 173345 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 | |||||||| || || || ||||| ||| || ||||| |||| | || || | || Sbjct 173344 CCAAGTTTTCATTGACGATGCCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAA 173285 Query 4993 AGTACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | |||| ||||||| || | | || ||||||| |||| || || | | ||| | Sbjct 173284 AATACTTTTCGTCATCATTCAGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTA 173225 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 ||| || | |||||||| || || || || || |||||||| |||||| Sbjct 173224 TTTCCTCGGCTGTCCAAAATGAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046591702474