Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq69 138 2e-27 seq24 111 2e-19 >seq69 Length=174959 Score = 138 bits (152), Expect = 2e-27 Identities = 405/613 (66%), Gaps = 11/613 (2%) Strand=Plus/Plus Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAA 77818 || |||||||| || | ||| |||||||| ||||| ||| ||||| || || || || Sbjct 172892 ATGGTGCCCAGGTTCTTTTGATTGCTCTTGCGGTTGCAATGA-TCCTTGTACAGCATGAA 172950 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 77877 ||| | || ||||| ||||| ||| | ||||| | ||| | | ||| ||| | Sbjct 172951 CGGGTTGCCCGTTTCCGTCTGTACTTCCAGGATAGAATACCACA-GCTTCTGAGCCCGCA 173009 Query 77878 TCATAGATTTGTATCGCCTCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATC 77935 | | | || | ||| | || || || ||| | |||| ||||||||||| Sbjct 173010 CCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCC--TCAAATTCATC 173067 Query 77936 TCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATC 77995 || | || ||| || || ||||| || |||||||| | | ||| ||||| | Sbjct 173068 GCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTCCAATCACCGTT 173127 Query 77996 TTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 78055 || || || || ||||| || || || || ||||| || || | || || || || | Sbjct 173128 TTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAGAGGTCGCGAGC 173187 Query 78056 TCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATG 78115 || | || || || || ||||| | ||| |||||||| | | ||||| ||| Sbjct 173188 TCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAACTCAAAGACATCAGCATG 173247 Query 78116 CCA-TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATAT 78174 ||| ||| || || ||||| || | | || || || || || || ||||| || | | Sbjct 173248 CCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGT 173307 Query 78175 ATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTG 78234 | | ||| ||||| ||| | || | | ||| ||||| | |||||| || || || || | Sbjct 173308 AGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTCCCGTTGG 173367 Query 78235 TTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTG 78294 | || | ||| || || | || || || | | | | ||| || || || | Sbjct 173368 TGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCACCGG 173427 Query 78295 CCATCTTAGATATTAGAGCGCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCA 78353 |||||||||| || | |||| |||| || | || ||||| || ||||| || |||||| Sbjct 173428 CCATCTTAGAGATCATGGCGC-ACGTCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCA 173486 Query 78354 TCCATCATGTTAA 78366 ||| |||||| || Sbjct 173487 TCCTTCATGTCAA 173499 >seq24 Length=328731 Score = 111 bits (122), Expect = 2e-19 Identities = 179/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || |||||||||||||| || || | || || | |||| Sbjct 173429 TCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAACGGGCCTCGGGGATC 173370 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || ||||| | || || ||| |||| || ||||| || || || || || || Sbjct 173369 TGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATGCCGTCCGAGGCGGCG 173310 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTATTCCAG 48614 ||||| || | | || | |||||| ||||||| | |||| || |||||| Sbjct 173309 AAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTCAGGCGGTTGTTCCAG 173250 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 |||| | || || || | ||||| ||| || |||||||||||||| |||||||| || Sbjct 173249 TCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAATGAGGCCTCTGCCTTC 173190 Query 48675 TTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 173189 TTGTACATTTGCCAAAT 173173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663781017920