Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20yeast-
like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq69 131 2e-25
seq24 105 1e-17
>seq69
Length=174959
Score = 131 bits (144), Expect = 2e-25
Identities = 469/730 (64%), Gaps = 15/730 (2%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
||||||||||| || | || ||| ||| |||||||| || || ||||| | | |
Sbjct 173057 TCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTC 173116
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| ||||| | || || || || ||||| || || || || ||||| || || | ||
Sbjct 173117 CAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAG 173176
Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699
|| || || | || | || || || || ||||| | ||| || ||||| |
Sbjct 173177 AGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAACTCAAAG 173236
Query 76700 ATATCAGAATGCCA-TGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758
| ||||| |||||| ||| || || ||||| || | |||| || || || || || ||
Sbjct 173237 ACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCC 173296
Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818
||| || | || | ||| ||||| ||| | || | | ||| ||||| | ||||| ||
Sbjct 173297 CTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 173356
Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878
|| || || || || | ||| || || ||||| || | | || ||
Sbjct 173357 GGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAGCCC 173416
Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT-TTCAATGTGTCATAGATGCCCT 76937
|| || || ||||| |||||||| | || || ||| || | ||||| || |||||||
Sbjct 173417 GATGCCACCGGCCATCTTAGAGATCATGGCGCA-CGTCTTGAGCGTGTCGTAAATGCCCT 173475
Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997
| || || |||||| |||||| || || || || |||| ||| ||| || |
Sbjct 173476 CGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTGGCACTGAGGCGTGC 173535
Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057
| || || |||| | || || ||||| ||||| || || | || ||||| |
Sbjct 173536 CAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACG 173595
Query 77058 TTTCAATAACTGCTTCTATAT------CCCATTGATGAATTCCTACAGCGACACGCATCA 77111
|||| | ||| || |||| ||||| || || || || || ||||| |
Sbjct 173596 TTTCGAGGACTCGGTCGATATTGTCGCCCCAT------ATACCCACGGCAACGCGCATGA 173649
Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
||| || || || || || || |||| | | |||| || || || ||||
Sbjct 173650 TCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGATAAGAACGCTCCA 173709
Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231
||| || || |||||||| | || |||||| | || || || || |||||| |
Sbjct 173710 GAGTCTTGAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGATGATGGCCGAATCGA 173769
Query 77232 GTTTGTCCTT 77241
| | |||||
Sbjct 173770 GCCTATCCTT 173779
>seq24
Length=328731
Score = 105 bits (116), Expect = 1e-17
Identities = 223/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911
|| || |||||||| |||||| || | | | || | || || | ||| ||||| ||
Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445
Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971
| || || | || || || ||||| || || |||||||||||||| || ||
Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385
Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031
| || || | ||||| ||||| | || || ||| ||| || ||||| || ||
Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325
Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091
|| || || || ||||| |||| | || | |||||| ||||| || | ||
Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265
Query 47092 A---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148
| | || |||||||||| | || || || | ||||| ||| || |||||||| |||
Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205
Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180
|| |||||||| || || ||||| | ||| ||
Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712929249048960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |