Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq69 131 2e-25 seq24 105 1e-17 >seq69 Length=174959 Score = 131 bits (144), Expect = 2e-25 Identities = 469/730 (64%), Gaps = 15/730 (2%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||||||| || | || ||| ||| |||||||| || || ||||| | | | Sbjct 173057 TCAAATTCATCGCCGTAGCAGTCGGCCAGACCGGGACATTCGTTGGGGCACATGAGCGTC 173116 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||||| | || || || || ||||| || || || || ||||| || || | || Sbjct 173117 CAATCACCGTTTTTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGGCTAAGAAG 173176 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 || || || | || | || || || || ||||| | ||| || ||||| | Sbjct 173177 AGGTCGCGAGCTCGAACCTCCTCCTTGCCATGGTTCTTGCGCAAATCCAGAAACTCAAAG 173236 Query 76700 ATATCAGAATGCCA-TGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||||| |||||| ||| || || ||||| || | |||| || || || || || || Sbjct 173237 ACATCAGCATGCCATTGGCTCCAGGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCC 173296 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||| || | || | ||| ||||| ||| | || | | ||| ||||| | ||||| || Sbjct 173297 CTGGTCGACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 173356 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 || || || || || | ||| || || ||||| || | | || || Sbjct 173357 GGTCCCGTTGGTGCCGGCAATGCAAGAGCCGGTAGCACGGATCCGATGCACGTTGAGCCC 173416 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT-TTCAATGTGTCATAGATGCCCT 76937 || || || ||||| |||||||| | || || ||| || | ||||| || ||||||| Sbjct 173417 GATGCCACCGGCCATCTTAGAGATCATGGCGCA-CGTCTTGAGCGTGTCGTAAATGCCCT 173475 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | || || |||||| |||||| || || || || |||| ||| ||| || | Sbjct 173476 CGATGCTGTCATCCTTCATGTCAACGAGGAAGCACGAGGACAGTTGGCACTGAGGCGTGC 173535 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | || || |||| | || || ||||| ||||| || || | || ||||| | Sbjct 173536 CAGCGTTGAACAGCGCCGGCGACGCATGGGTGAAGAGCTTGCTGGACATGAGGTTGTACG 173595 Query 77058 TTTCAATAACTGCTTCTATAT------CCCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||| | ||| || |||| ||||| || || || || || ||||| | Sbjct 173596 TTTCGAGGACTCGGTCGATATTGTCGCCCCAT------ATACCCACGGCAACGCGCATGA 173649 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || || || || |||| | | |||| || || || |||| Sbjct 173650 TCATGTGTTGGGGGCGCTCAACGATCTTGCCGTCGAGCTTCAGCAGATAAGAACGCTCCA 173709 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||| || || |||||||| | || |||||| | || || || || |||||| | Sbjct 173710 GAGTCTTGAAGCCAAAATACTGATAGTTAAAGTCCCGGTCATAGATGATGGCCGAATCGA 173769 Query 77232 GTTTGTCCTT 77241 | | ||||| Sbjct 173770 GCCTATCCTT 173779 >seq24 Length=328731 Score = 105 bits (116), Expect = 1e-17 Identities = 223/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || |||||||| |||||| || | | | || | || || | ||| ||||| || Sbjct 173504 GTCTCAATAGCATTGAAGAGATAGGTCCGCTGAGCATTCTCCTTGATATAGGTATCGATC 173445 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | || || | || || || ||||| || || |||||||||||||| || || Sbjct 173444 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATAATCTGAAATCCGTAGAAGCAA 173385 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | || || | ||||| ||||| | || || ||| ||| || ||||| || || Sbjct 173384 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCATTGACGATG 173325 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || || || || ||||| |||| | || | |||||| ||||| || | || Sbjct 173324 CCGTCCGAGGCGGCGAAAAAGGCCAGGATGTGGGACACAAAATACTTTTCGTCATCATTC 173265 Query 47092 A---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 | | || |||||||||| | || || || | ||||| ||| || |||||||| ||| Sbjct 173264 AGGCGGTTGTTCCAGTCATGCAAGTCCTTGGAGAGATCTATTTCCTCGGCTGTCCAAAAT 173205 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || |||||||| || || ||||| | ||| || Sbjct 173204 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 173173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929249048960