Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20yeast- like_20symbiont_20[genbank_20GCA_5F000758425.1_202014-09-26] 578 sequences; 26,809,569 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq70 147 5e-30 seq14 140 8e-28 seq12 138 3e-27 >seq70 Length=137430 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| |||||||| || || ||||| || |||||||| || ||| Sbjct 82756 CAGATCTTTGTCAAAACCCTCACAGGGAAGACAATCACTCTTGAGGTGGAGTCTTCTGAC 82815 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 82816 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 82875 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| |||||||||||||| | || || ||| |||||| | Sbjct 82876 CGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCCTGAGCGACTATAACATA 82935 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 82936 CAGAAGGAGAGCACTCTGCACCTCGT 82961 >seq14 Length=772799 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || ||||| |||||||||||||| || || || || || Sbjct 70029 TTTCGTCAAGACCCTAACGGGCAAAACCATCACCCTCGAGGTCGAGTCGTCGGAAACGAT 69970 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| ||| | ||| ||||||||||| || || | || |||||||| || |||||||| Sbjct 69969 CGATAACTTTAAATCCAAGATTCAGGATAAGGAGGTTATTCCTCCGGATCAACAACGACT 69910 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| |||||||| | || || ||||||| ||| ||||||| Sbjct 69909 GATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAA 69850 >seq12 Length=470578 Score = 138 bits (152), Expect = 3e-27 Identities = 145/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| ||||||||||| ||||| || ||| |||| || || |||||||| Sbjct 223679 TCACTGGAAAGACGATCACCCTAGAGGTAGAGTCCTCTAACACTATTGATAACGTCAAGT 223738 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || ||||| || || ||||| | ||||| ||||||| Sbjct 223739 CCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAACGCTTGATCTTTGCCGGAA 223798 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| | || ||||| ||||| |||| |||| || ||| | || || || || ||||| Sbjct 223799 AACAGTTGGAGGATGGCAGGAC-CTTGTCCGACTACAACATTCAGAAGGAGTCTACACTA 223857 Query 178122 CATCTTGT 178129 |||||||| Sbjct 223858 CATCTTGT 223865 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || || |||||||| | || || ||| || ||| Sbjct 223888 CAAATCTTTGTGAAGACATTAACTGGCAAGACGATCACTTTGGAAGTCGAATCGTCCGAC 223947 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || || || |||||||| || || || || || || || || Sbjct 223948 ACCATCGATAATGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCTGATCAACAG 224007 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||||| ||||||| ||| || Sbjct 224008 CGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTGTCCGATTACAACATC 224067 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||| ||||| Sbjct 224068 CAGAAAGAGTCCACGTTGCACCTTGT 224093 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || ||||| ||||| || | || || ||| || || Sbjct 224116 CAAATATTCGTCAAGACTTTGACGGGAAAGACGATTACTTTGGAAGTTGAATCTTCGGAT 224175 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || ||||| ||||| || || || ||||| || Sbjct 224176 ACGATTGACAATGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCCCCCGACCAACAG 224235 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||||||||| || ||||||||| | ||||| |||||| || | Sbjct 224236 CGCCTCATATTTGCCGGAAAACAACTGGAAGATGGACGTACTCTGAGCGATTACAATATT 224295 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||| || |||| ||||| Sbjct 224296 CAGAAAGAAAGCACTTTGCACCTTGT 224321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722285618132