Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq195 302 5e-77 >seq195 Length=28285 Score = 302 bits (334), Expect = 5e-77 Identities = 614/902 (68%), Gaps = 10/902 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 |||||||| ||||| |||||| ||| | ||||| ||| | |||||| | || | Sbjct 13948 TCAAACTCTTCTCCGTAAACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTC 14007 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAA 54069 || ||| | | | ||||||||||||||| | ||||| ||||| | ||| || ||| Sbjct 14008 CAATCTTGATTTGCTTCCACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAA 14066 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 |||||||| | || | ||| || || || ||| || |||||| | ||| | | Sbjct 14067 AAGATCTCTTGCTCGAATTTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAA 14126 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||||| | |||||| ||||| | || || | | | ||||| || ||||| || || Sbjct 14127 TATATCTGCATGCCATGGTTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACC 14186 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | |||| ||| || || || | || || | ||| |||||||||||||| || Sbjct 14187 TTGGTCAACATATCGAGCAGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGA 14246 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGA 54307 || |||||| || || | ||||| || ||| | ||||||||| | | |||| || Sbjct 14247 TGTACCATTAGTTCCCGCAATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGC 14304 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCC 54366 || || || ||||| ||||| || | || ||| ||||||| |||||||| || || Sbjct 14305 CCAATTCCTCCTGCTGTTTTACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCC 14363 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 || || |||||| |||| | | ||| || ||| || | ||| || ||| Sbjct 14364 TTCAATGGAATCATCTTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGT 14423 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 ||| ||||||||||| ||||| ||||| || || | ||||| |||| | ||||| || Sbjct 14424 TCCTGCATTAAATAATGTAGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATA 14483 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || |||||| || | ||| ||| || || ||||| |||||||||| ||| Sbjct 14484 TGTTTCAATAGCTTTTTCAACATCATCACCATGGATACCAACTGCAACACGCATTATCAT 14543 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || |||||||| | | ||| || || || | || | || || || Sbjct 14544 ATGTTGGGGTCTTTCTGCAACCTTTCCATTAATACGAAGAAGATAACTTCGCTCTAATGT 14603 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||||| ||||||||||| |||| ||| || || ||||| ||||| | || |||| Sbjct 14604 TTTAAATCCAAAATAGTTATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTC 14663 Query 54667 ATCCTTATATTTGTTAACTACATC-CATGGTAATACTTGAAATAATCGGAGAATGTTTCC 54725 || || | | | ||| || ||| | || ||||| || || || | || Sbjct 14664 ATTGGCATGTCTCATTACTGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGT 14722 Query 54726 CATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttG 54785 |||| | ||||| ||||||| | |||||||| || || | | ||||| |||||| | Sbjct 14723 TATTTCTTGGATTAACATAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAG 14782 Query 54786 TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 54845 ||| ||||| ||||| ||||| || || | || || | ||| |||||||| ||||| | Sbjct 14783 TTTGCTTGTGAAGATTAGATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCT 14842 Query 54846 GT 54847 || Sbjct 14843 GT 14844 Score = 181 bits (200), Expect = 1e-40 Identities = 612/950 (64%), Gaps = 65/950 (7%) Strand=Plus/Plus Query 52993 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 53051 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 53052 ---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATA 53108 |||| |||||||| ||| || | | ||||| ||||| || || ||||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 53109 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACA 53168 || | || |||| | |||| || ||||| ||||||||||||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 53169 ATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAA 53228 || | ||||| || || ||||||||||| ||||| | | |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 53229 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG 53288 |||||| || ||| || ||||||||||| || | | | || | || || ||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 53289 TTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNN 53348 | || ||| |||||| | ||||| | ||| | ||| | || || || Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 53349 NNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTATGGT 53404 ||| | |||||| | | |||||| ||||| | || || || ||||| Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 53405 CCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAG 53464 ||||| | | || | ||| || || |||| || | | ||| || ||||| || Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 53465 ATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGG-----------ATAA--- 53509 || || | || || |||| ||| | ||| | |||||||| |||| Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATG-AGGTGAGTCAAATGGCATTCTAAGAGATAAAAA 13429 Query 53510 ----------------------TTTAA---GAGAATAAACGC--GTCTGCTAAT---CCT 53539 ||||| |||||||| || |||| | ||| Sbjct 13430 GGCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCT 13489 Query 53540 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 53599 ||||||||||| || || || | |||||| ||||| || | ||||||| | |||| Sbjct 13490 TGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGA 13549 Query 53600 TAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTC 53659 |||||||||| ||| ||||| ||||| | ||||| | | ||||| ||||| | Sbjct 13550 TAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGT 13609 Query 53660 AGTTTGAGAAAATCA-AATTGTCCATCT-ATTACAAACATGTTCAATGCAATAGATGCCA 53717 || || |||||||| || || | | | | || ||| || | || |||||| ||| | Sbjct 13610 AGCTTTTGAAAATCATAAATGCCTTTGTCAATA-AAAGTTGGT-AAAGCAATACTTGCAA 13667 Query 53718 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 53777 |||| ||||| ||||| |||| | | | ||| | ||||| |||||||| | |||| Sbjct 13668 GATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAG 13727 Query 53778 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAA 53836 ||| ||||| || || | ||| | ||||| | ||| | || || ||||| |||||| Sbjct 13728 AACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAA 13786 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 || || || || |||| || || |||| | ||| | ||| || | ||| Sbjct 13787 AGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCA 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718943095840