Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq132 122 1e-22 seq74 113 7e-20 seq276 98.7 2e-15 seq220 95.1 2e-14 >seq132 Length=47203 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 || ||||| ||||| ||||| || ||| | ||| | || | || |||||| ||| Sbjct 38827 AAAACACTTACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCAGACACAATTGACAAT 38768 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | ||| || ||||||||||||||||| || ||||| ||||||||| |||| || ||| Sbjct 38767 GTCAAAAGCAAGATTCAAGATAAAGAAGGGATTCCACCGGATCAACAACGGCTAATCTTT 38708 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || ||||| || || |||||| | ||||| | ||||| ||||| || |||||||| Sbjct 38707 GCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGAAAGAATCG 38648 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | || | || || || | || ||||| || Sbjct 38647 ACTCTTCACCTTGTATTGCGGCTCCGTGGTGGCAT 38613 >seq74 Length=105699 Score = 113 bits (124), Expect = 7e-20 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 124542 CAAATATTTA-TAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 ||||||| || | || ||||| || || || || || | || ||||| ||| | Sbjct 40754 CAAATATGTAGTGAAAACACTTACGGGAAAGACAATCGTACTTGAAGTTGAATCAAGCAA 40813 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGAT-AAAGAAGGTATACCACCTGATCAAC 124659 ||||||| ||| | ||| | ||||| || | ||||| | ||| | |||||||||| Sbjct 40814 TACAATTAACAATATTAAAAATAAAAT-CAGTAGCAAAGAGGAGATATCGCCTGATCAAC 40872 Query 124660 AAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATA 124719 || || | |||| ||| ||||| || | || ||| ||| |||||| |||||||||| Sbjct 40873 AACGGTTAATTTATGCTGGAAAGCAGCTGGAAGATGCTCGGACATTATCTGATTATAATA 40932 Query 124720 TTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| ||||| || ||||| || |||||||||||| | | ||||| Sbjct 40933 TTCAGAAAGATTCTACTTTACACTTGGTTTTACGTCTTCTTGGTGG 40978 >seq276 Length=28560 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 205666 ATTTTATTTATAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATA 205725 ||||| | || |||| | || ||| |||| ||||||| |||||||| || | | Sbjct 20537 ATTTTTTCAATGATATTGGCTAGTTGGTCAACTCCTTGACCTGTATAATCAGTTTTACAA 20478 Query 205726 TCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 ||||||||||| || || || || ||||||||||||||||||| ||||| | ||||||| Sbjct 20477 TCAATATATTTTGCGCCGAAGTGTCGCCATTGAAAACCATAAATAGGACCAAGATCACCT 20418 Query 205786 TCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaa 205845 |||| || | || || | | ||||| | ||| |||||| | ||||| Sbjct 20417 TCTTGGTGTTCTGTTAATCCGATAGAGTCAAGATATTCTTTTGAACCATTTGCGTCCCAT 20358 Query 205846 atatggattcctttatttttta 205867 ||||| ||| ||| || |||| Sbjct 20357 ATATGAATTTTTTTTTTCTTTA 20336 >seq220 Length=17533 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 124552 TAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTA 124611 |||| || |||||||| ||||| ||||| |||| | ||| || |||||||| | Sbjct 2101 TAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGACA 2160 Query 124612 ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTT 124671 || | ||| ||||||||||| || || || || ||||| || ||||| | | |||| Sbjct 2161 ATGTTAAAAGCAAAATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATTT 2220 Query 124672 TTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAAT 124731 |||| || || || | || || | || || || || || ||||| || ||||||| Sbjct 2221 TTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGAAT 2280 Query 124732 CAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || | ||| | || ||||| | || || ||||| Sbjct 2281 CGACCCTTCATCTTGTATTACGCCTTCGTGGCGGTAT 2317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755452619334400