Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq29 86.0 1e-11 >seq29 Length=6877 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 135649 CATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACG 135708 ||||| ||||| || ||||||| ||| | || | |||| || ||||| |||||||| Sbjct 5637 CATATTGAACTACGGCGATGGGCAGATATACTTGTATTAGCACCATTAACAGCAAATACA 5696 Query 135709 TTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGG 135768 | |||||||| || ||||| ||||||||||| || | || | ||| || | || ||| Sbjct 5697 CTGGCAAAAATGGCAAATGGATTATGCGATAATCTATTAACATGTATATTACGTGCATGG 5756 Query 135769 GATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCT 135828 | | | | ||| || | |||||||||||||| ||||||| | ||||| Sbjct 5757 CACCCGAGCCGGCCAATCCTCGCAGCACCTGCAATGAATACATATATGTGGCATCATCCA 5816 Query 135829 ATTACAGAAAAACATAT 135845 | ||| || ||||| Sbjct 5817 CTAACACAACGCCATAT 5833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923192668694320