Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq220 98.7 9e-16 >seq220 Length=17533 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 ||||| ||||| ||||| |||||||| || | || || ||| | || || | |||| Sbjct 2100 GTAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGAC 2159 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | || ||| | ||| |||||||| ||| | || || ||||| |||||| |||| Sbjct 2160 AATGTTAAAAGCAAAATTCAAGACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATT 2219 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 || || ||||| ||| |||||||| ||| | || || || || || |||||| Sbjct 2220 TTTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAAAGAA 2279 Query 31385 TCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| ||| | | || | ||||||| Sbjct 2280 TCGACCCTTCATCTTGTATTACGCCTTCGTGGCGGTA 2316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764405195360