Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq195 86.0 1e-11 >seq195 Length=28285 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 94825 TTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAG 94884 ||||| ||||||||||| || |||||| |||||||| | | |||||||| || Sbjct 14344 TTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTTCATAGTTACTAGGAAGCAGGAC 14403 Query 94885 GAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAG 94944 |||||||| || | ||||| |||||| | ||| || |||||||| || | ||| Sbjct 14404 GAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGTAGGTGAAGCATGTGTCATATAT 14463 Query 94945 TGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCG 95004 | ||||| |||| |||||||||||| | || | || || || || || Sbjct 14464 TTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTCAACATCATCACCATGGATACCA 14523 Query 95005 ACAGCCACACGCATAATCAT 95024 || || |||||||| ||||| Sbjct 14524 ACTGCAACACGCATTATCAT 14543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579460901890