Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq195 394 1e-104 >seq195 Length=28285 Score = 394 bits (436), Expect = 1e-104 Identities = 1270/1965 (65%), Gaps = 126/1965 (6%) Strand=Plus/Plus Query 62231 CTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 62289 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 62290 ---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATA 62346 |||| ||||| || ||| || | | ||||| ||||| || || ||||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 62347 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACA 62406 || | || |||| | |||| || || || |||||||| |||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 62407 ATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAA 62466 || | ||||| || || ||||||||||| ||||| | |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 62467 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG 62526 |||||| || ||| || ||||||||||| || | | | || | || || ||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 62527 TTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNN 62586 | || ||| |||||| | ||||| | ||| | ||| | || || || Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 62587 NNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCATATGGT 62642 |||||| | |||||| | | |||||| ||||| | || || |||||||| Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 62643 CCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAG 62702 ||||| | | || | || || || |||| || | | ||| || |||||||| Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 62703 ATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA-ATAAA 62761 || || | || || |||| ||| | || |||||||| | | ||||||| | ||| Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATGAGGTGAGTCAAATGGC-ATTCTAAGAGATAAAAA 13429 Query 62762 CGCGTCCGC--------------------------TAAT------------------CCT 62777 || || || |||| ||| Sbjct 13430 GGCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCT 13489 Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62837 ||||||||||| || || || | |||||| ||||| || | ||||||| | |||| Sbjct 13490 TGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGA 13549 Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 62897 |||||||||| ||| ||||| ||||| | |||||| | | ||||| ||||| | Sbjct 13550 TAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGT 13609 Query 62898 AGTTTGAGAAAATCA-AATCGCCCATCT-ATTACAAACATGTTCAATGCAACAGATGCCA 62955 || || |||||||| || ||| | | | || ||| || | || |||| | ||| | Sbjct 13610 AGCTTTTGAAAATCATAAATGCCTTTGTCAATA-AAAGTTGGTAAA-GCAATACTTGCAA 13667 Query 62956 GATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 |||| || || ||||| |||| | | | ||| | ||||| |||||||| | |||| Sbjct 13668 GATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAG 13727 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAA 63074 ||| |||||||| || | ||| | ||||| | ||| | || || ||||| |||||| Sbjct 13728 AACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAA 13786 Query 63075 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 63134 || || || ||| |||| || || |||| | ||| | ||| || | ||| | | || Sbjct 13787 AGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTCTG 13845 Query 63135 GCCTTTATTA--TAGATTTGTA---TCTCCTTTCTC-----TTTCGTATAGAG------- 63177 ||||| | | || ||| | | ||| ||| |||| |||| | Sbjct 13846 TGCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTT 13905 Query 63178 --------------------TATACAATCGT-----------TCGAACTCGTCTCCCCAA 63206 |||| ||| || || ||||| ||||| || Sbjct 13906 AAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAA 13965 Query 63207 ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 |||| ||| | | ||| ||| | |||||| | || ||| ||| | | | | Sbjct 13966 ACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCC 14025 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTTGTTCTATG 63325 |||||||||||||| | ||||| ||||| | ||| || ||| |||||||||| || | Sbjct 14026 ACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAAT 14084 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||| || || || ||| || |||||| | ||| | | ||||| | |||||| || Sbjct 14085 TTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGG 14144 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445 ||| | || || || | | ||||| || ||||| || || || || | |||| ||| Sbjct 14145 TTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGC 14204 Query 63446 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63505 || || || | || || | ||| ||||||||||| || ||| ||||||| || || | Sbjct 14205 AGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGC 14264 Query 63506 GATATAGCCTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATT 63563 ||||| | ||| | ||||||||| | | |||| || || ||||| ||||| || Sbjct 14265 AATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGCCCAATTCCTCCTGCTGTT 14322 Query 63564 TTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 ||| || | || ||| ||||||| || ||||| || ||||| ||| |||||| | Sbjct 14323 TTACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTT 14381 Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682 ||| | | ||| || ||| || | ||| || | |||||| ||||||||||| || Sbjct 14382 CATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGT 14441 Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742 ||| ||||| || || | ||||| |||| | ||||| || || ||||||||| || Sbjct 14442 AGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTC 14501 Query 63743 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63802 | ||| ||| || || ||||| |||||||||| ||| || || |||||||| | Sbjct 14502 AACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGC 14561 Query 63803 AATTTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 || || | ||| | || ||| || | || || |||||||| |||||||||| Sbjct 14562 AACCTT-TCCATTAATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAATAGT 14620 Query 63862 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAA 63921 | |||| ||| || || ||||| ||||| | | || | || || | | | | Sbjct 14621 TATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTA 14680 Query 63922 CTATATC-CATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63980 || | || ||| | || ||||| || || || | || |||| | ||||||||| Sbjct 14681 CTGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACA 14739 Query 63981 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 64040 |||| |||||||| || || | | ||||| |||||| |||| |||||| ||||| Sbjct 14740 TAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTA 14799 Query 64041 GATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGT 64085 |||| || || | || || | ||| |||||||| ||||| ||| Sbjct 14800 GATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814781566240