Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq195 233 2e-56 >seq195 Length=28285 Score = 233 bits (258), Expect = 2e-56 Identities = 766/1173 (65%), Gaps = 77/1173 (7%) Strand=Plus/Plus Query 37523 AACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCA 37582 |||| |||||||| || || || || | |||| | ||||| || || | |||| || Sbjct 13485 AACCTTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCA 13544 Query 37583 CTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTA 37642 | ||||||||||| | ||| || || ||||||| |||| || ||| | ||| |||| | Sbjct 13545 CAGGATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAAC-A 13603 Query 37643 TTCTCAACTTGTCGAA---CATAAATACGTTATTATTAACAAATTTACTCAACGAAATAG 37699 | | | | | ||| ||||||| | || | | || ||| | || | |||| Sbjct 13604 TCATGTAGCTTTTGAAAATCATAAATGCCTT--TGTCAATAAAAGTTGGTAAAGCAATAC 13661 Query 37700 ATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAG 37758 | | ||||| || ||||| ||||||||| | | || | | || || || || || Sbjct 13662 TTGCAAGATTGCAAACAGCTACTTCATCTG-GAGATGAATACTCGATTATTTCAGTGCAT 13720 Query 37759 AGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCT 37818 | |||| || | || || || | ||| | ||||| ||||| ||| || | |||| Sbjct 13721 AAATTAGAACATTTGATAGTCCCAAGATTCTTCTGATTCGATTTACGATTGCATGCATCT 13780 Query 37819 TTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAA 37878 ||||| || ||| | || | ||| ||| | || || || | ||| | | ||||| Sbjct 13781 TTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATAGT 13840 Query 37879 CTTCT-TGCTTTAACGAT----------CGCTTTAAtt-------tttttCTT------- 37913 |||| ||||||||| || || ||| || |||||| | Sbjct 13841 -TTCTGTGCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAAC 13899 Query 37914 -TGTTTC-------GT----ATTCTATATATAAT--TTGTTAAAA---TCA-----TTCC 37951 | ||| || || |||||||||| | | |||| ||| ||| Sbjct 13900 CTTTTTAAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCT 13959 Query 37952 CCC-ATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCT 38010 || | |||||| || || || |||| ||||| | || ||| |||| || | Sbjct 13960 CCGTAAACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTT 14019 Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070 ||| || |||| ||||||||| ||||||| |||||| || ||| | |||| | | | Sbjct 14020 GCTTCCACTCGTTTCATAAATAAGTCAGGTATCCATAAGCCATAAAAAAGATCTCTTGCT 14079 Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTTA-AGCTTAGAAAATCGAATATATCAGCGTG 38129 | | |||||| || || ||| || | | | | |||| || |||||||| || || Sbjct 14080 CGAATTTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAAT-TCAAATATATCTGCATG 14138 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 |||||||||||||||||| | | || || || | || | || || || | || ||| Sbjct 14139 CCATGGTTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATA 14198 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 || | | || || || ||| || | |||||| | |||||||||||| | || || | Sbjct 14199 TCGAGCAGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGT 14258 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT----CCTATTCCAC 38305 || | |||||| | || |||| || ||| | | ||| | || ||||| | Sbjct 14259 TCCCGCAATATAACTCCCAGTAGCACGAATACAA----TGAACATTGAGCCCAATTCCTC 14314 Query 38306 CTGCATGTTTTGATATTAAAGCGCAT-TGTTTTAAC-GTATCAAATATACCTTCTATACT 38363 |||| |||||| || | | | ||| |||||||| |||||| | || ||||| || Sbjct 14315 CTGC-TGTTTTACTAATCATG-GCACATGTTTTAAGTGTATCATAAATTCCTTCAATGGA 14372 Query 38364 GTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTT 38423 ||||| || || | || || || || || | |||||| ||||||||| || || Sbjct 14373 ATCATCTTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATT 14432 Query 38424 AAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTAT 38483 |||||||||||| || |||||| | | ||||| | |||| | |||||||||||| || Sbjct 14433 AAATAATGTAGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAAT 14492 Query 38484 TACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | | || | |||| | || || ||||| | | || | ||||| ||||||||| || Sbjct 14493 AGCTTTTTCAACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGG 14552 Query 38544 TCTTTCT---ATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTAT 38600 ||||||| | || |||| | | ||| ||||| | ||||||||||| | Sbjct 14553 TCTTTCTGCAACCTTTCCATTAATACG---AAGAAGATAACTTCGCTCTAATGTTTTAAA 14609 Query 38601 TCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||||||| |||||| | |||| | |||||| Sbjct 14610 TCCAAAATAGTTATATGTAAAATCACGATCGTA 14642 Score = 156 bits (172), Expect = 4e-33 Identities = 330/485 (68%), Gaps = 17/485 (4%) Strand=Plus/Plus Query 36982 TTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC---T 37038 |||||||| | |||||| || |||||||||| ||| || | |||| | | | Sbjct 12897 TTTTGAGACAACTCCCATACAGTTTTATATAACGCTTTAATTTCTGCTGGAATACTAGGT 12956 Query 37039 AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATA 37098 | || ||||||||| ||||||| | | |||| |||| || || || |||||||| Sbjct 12957 ATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACAA- 13015 Query 37099 TTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATA 37156 | ||| | | || || | | ||| ||||||||| || ||||| ||||| | | Sbjct 13016 -TCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 37157 ATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATA 37216 || | | | |||||| || || ||||||||||||| |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 37217 TTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT--- 37273 ||||||||||| ||| |||||||| ||||||| ||||| || | | |||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 37274 GTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG--GTTCTTTAA 37331 ||| | | ||| ||||| | | || ||| |||||||||||||| || | | || Sbjct 13195 GTGCAAT-ATTAACTTTTAAACT--ATCCCAGTCCCATAAATCTGTAGGAACTACGTT-- 13249 Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 ||||||||||||||| | |||||||| ||||| || | | || || ||||| || Sbjct 13250 CCACATATCATATTGCAAAATACCTTGGGATGCTGGCGATCCTTCGTAGGTTTCATATGG 13309 Query 37392 TCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAA 37451 || | || || | |||||| | |||||| || |||| |||||| ||||| || Sbjct 13310 ACCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAA 13369 Query 37452 AATTT 37456 |||| Sbjct 13370 TATTT 13374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522703351520