Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq195 394 1e-104 >seq195 Length=28285 Score = 394 bits (436), Expect = 1e-104 Identities = 1271/1965 (65%), Gaps = 126/1965 (6%) Strand=Plus/Plus Query 65024 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 65082 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 65083 ---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATA 65139 |||| ||||| || ||| || ||| ||||| ||||| || || ||||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 65140 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACA 65199 || | || |||| | |||| || ||||| ||||||||||||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 65200 ATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAA 65259 || | ||||| || || ||||||||||| ||||| | | |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 65260 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG 65319 |||||| || ||| || ||||||||||| || | | | || | || || ||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 65320 TTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNN 65379 | || ||| |||||| | ||||| | ||| | ||| | || || || Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 65380 NNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTATGGT 65435 ||| | |||||| | | |||||| ||||| | || || || ||||| Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 65436 CCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAG 65495 ||||| | | || | ||| || || |||| || | | ||| || ||||| || Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 65496 ATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGG-----------ATAA--- 65540 || || | || || |||| ||| | ||| | |||||||| |||| Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATG-AGGTGAGTCAAATGGCATTCTAAGAGATAAAAA 13429 Query 65541 ----------------------TTTAA---GAGAATAAACGC--GTCTGCTAAT---CCT 65570 ||||| |||||||| || |||| | ||| Sbjct 13430 GGCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCT 13489 Query 65571 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 65630 ||||||||||| || || || | |||||| ||||| || | ||||||| | |||| Sbjct 13490 TGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGA 13549 Query 65631 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 65690 |||||||||| ||| ||||| ||||| | |||||| | | ||||| ||||| | Sbjct 13550 TAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGT 13609 Query 65691 AGTTTGAGAAAATCA--AATCGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCA 65748 || || |||||||| ||| || | || ||| || | || |||| | ||| | Sbjct 13610 AGCTTTTGAAAATCATAAATGCCTTTGTCAATA-AAAGTTGGTAAA-GCAATACTTGCAA 13667 Query 65749 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 65808 |||| ||||| ||||| |||| | | | ||| | ||||| |||||||| | |||| Sbjct 13668 GATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAG 13727 Query 65809 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAA 65867 ||| ||||| || || | ||| | ||||| | ||| | || || ||||| |||||| Sbjct 13728 AACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAA 13786 Query 65868 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 65927 || || || ||| |||| || || |||| | ||| | ||| || | ||| | | || Sbjct 13787 AGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTCTG 13845 Query 65928 GCCTTTATTA--TAGATTTG------TATCT--CTTTTCTCTTTCGTATAG--------- 65968 ||||| | | || ||| | ||| || | | |||| |||| Sbjct 13846 TGCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTT 13905 Query 65969 ------------------TGTATACAATCGT-----------TCGAACTCGTCTCCCCAA 65999 | |||| ||| || || ||||| ||||| || Sbjct 13906 AAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAA 13965 Query 66000 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 66059 |||| ||| | ||||| ||| | |||||| | || ||| ||| | | | | Sbjct 13966 ACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCC 14025 Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATG 66118 |||||||||||||| | ||||| ||||| | ||| ||||| || |||||| | || | Sbjct 14026 ACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAAT 14084 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||| || || || ||| || |||||| | ||| | | ||||| |||||| || Sbjct 14085 TTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGG 14144 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 66238 ||| | || || || | | ||||| || ||||| || || || || | |||| ||| Sbjct 14145 TTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGC 14204 Query 66239 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 66298 || || || | || || | ||| |||||||||||||| ||||||||||| || || | Sbjct 14205 AGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGC 14264 Query 66299 GATATAGCTTCCACTTGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATT 66356 ||||| || ||| | ||||||||| | | |||| || || ||||| ||||| || Sbjct 14265 AATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGCCCAATTCCTCCTGCTGTT 14322 Query 66357 TTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCAT 66415 ||| || | || ||| ||||||| |||||||| || || || || |||||| | Sbjct 14323 TTACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTT 14381 Query 66416 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475 ||| | | ||| || ||| || | ||| || |||||| ||||||||||| || Sbjct 14382 CATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGT 14441 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 66535 ||| ||||| || || | ||||| |||| | ||||| || || ||||||||| || Sbjct 14442 AGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTC 14501 Query 66536 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 66595 | ||| ||| || || ||||| |||||||||| ||| || || |||||||| | Sbjct 14502 AACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGC 14561 Query 66596 GATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 | ||| | ||| | || ||| || | || || |||||||| |||||||||| Sbjct 14562 AACCTT-TCCATTAATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAATAGT 14620 Query 66655 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 66714 | |||| ||| || || ||||| ||||| | || |||| || || | | | | Sbjct 14621 TATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTA 14680 Query 66715 CTACATC-CATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACA 66773 || || ||| | || ||||| || || || | || |||| | ||||| ||| Sbjct 14681 CTGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACA 14739 Query 66774 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTT 66833 |||| |||||||| || || | | ||||| |||||| |||| ||||| ||||| Sbjct 14740 TAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTA 14799 Query 66834 GATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGT 66878 ||||| || || | || || | ||| |||||||| ||||| ||| Sbjct 14800 GATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169854676720