Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq195 475 5e-129 >seq195 Length=28285 Score = 475 bits (526), Expect = 5e-129 Identities = 1293/1964 (66%), Gaps = 124/1964 (6%) Strand=Plus/Plus Query 78903 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 78961 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 78962 ---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATA 79018 |||| ||||| || ||| || ||| ||||| ||||| || || |||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 79019 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACA 79078 || | || |||| | |||| || ||||| ||||||||||||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 79079 ATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAA 79138 || | ||||| || || ||||||||||||||||| | | || ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 79139 TTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG 79198 |||||| || ||| || ||||||||||| || | | | || | || || ||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 79199 ATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAA 79258 | || ||| |||||| | ||||| ||||| | ||| | || || || ||||| | Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 79259 GATCATATTGTAGAATACCGT----TACTAGCGTATGATCCTGTGTATGTTTCATAAGGT 79314 ||||||||| | |||||| | | || ||| ||||| ||| |||||||| || Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 79315 CCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAA 79374 ||||| | || || ||||| || || |||| ||| | | ||| || ||||| || Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 79375 ATCTTCTTATTGAGATCTTGTGC--------------------TTCTAGGCTATCAAATG 79414 || || | || || |||| ||| ||||| | || ||| | Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATGAGGTGAGTCAAATGGCATTCTAAGAGATAAAAAG 13430 Query 79415 G-ATAA---------------TTTAA---GAGAATAAACGC--GTCTGCTAAT---CCTT 79450 | || | ||||| |||||||| || |||| | |||| Sbjct 13431 GCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCTT 13490 Query 79451 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 |||||||||| || || || | |||||| ||||| || | ||||||| | ||||| Sbjct 13491 GAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGAT 13550 Query 79511 AATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTA 79570 ||||||||| ||| ||||| ||||| | ||| || ||| ||||| ||||| | || Sbjct 13551 AATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGTA 13610 Query 79571 GTTTGAGAAAATCA-AATCGTCCATCT-ATTACAAACATGTTCAACGCGACAGATGCCAG 79628 | || |||||||| || | | | | | || ||| || | || || | | ||| || Sbjct 13611 GCTTTTGAAAATCATAAATGCCTTTGTCAATA-AAAGTTGGTAAA-GCAATACTTGCAAG 13668 Query 79629 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACT 79688 ||| ||||| ||||| |||| | | | ||| | |||||||||||||| | ||| Sbjct 13669 ATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAGA 13728 Query 79689 ACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAA 79747 ||| || || || || | ||| | ||||| | ||| | || || ||||| ||||||| Sbjct 13729 ACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAAA 13787 Query 79748 GAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 79807 | || || ||| |||| || || |||| | ||| | ||| || | ||| | | || Sbjct 13788 GCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTCTGT 13846 Query 79808 CCTTTATTA--TAGACTTG------TATCT--CTTTTCTCTTTCGTAT------------ 79845 ||||| | | || ||| | ||| || | | |||| ||| Sbjct 13847 GCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTTA 13906 Query 79846 --------------TG-TGTATATAATCGT-----------TCGAACTCGTCTCCCCAAA 79879 || | |||||||| || || ||||| ||||| ||| Sbjct 13907 AAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAAA 13966 Query 79880 CATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTA 79939 ||||||||| ||||| ||||| ||||| | || ||| ||| || | | | Sbjct 13967 CATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCCA 14026 Query 79940 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATGC 79998 ||||||||||||| | ||||| ||||| | ||| || ||| |||||||| | || | Sbjct 14027 CTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAATT 14085 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || ||| || |||||| | ||| | | ||||| | |||||| ||| Sbjct 14086 TCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGGT 14145 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | || || || | | || || || ||||| || || || || | |||| ||| Sbjct 14146 TCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGCA 14205 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 || || || | || || | ||| |||||||||||||| ||||||||||| || || | Sbjct 14206 GTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGCA 14265 Query 80179 ATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTT 80236 ||||| || ||| | ||||||||| | | |||| || || ||||| ||||| ||| Sbjct 14266 ATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGCCCAATTCCTCCTGCTGTTT 14323 Query 80237 TAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || || | || ||| ||||||| |||||||| || || || ||| |||||| || Sbjct 14324 TACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTTC 14382 Query 80296 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 80355 || | | ||| || ||| || | ||| || |||||| ||||||||||| ||| Sbjct 14383 ATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGTA 14442 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 || ||||| || || | ||||| |||||| ||||| || || ||||||||| ||| Sbjct 14443 GGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTCA 14502 Query 80416 ATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 80475 | ||| ||| || || || || |||||||||| ||| || || |||||||| | Sbjct 14503 ACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGCA 14562 Query 80476 ATCTTGTTATTTATTTTCAACAAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 80534 | ||| | ||| | || ||| ||| | || || |||||||| ||||||||||| Sbjct 14563 ACCTT-TCCATTAATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAATAGTT 14621 Query 80535 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 80594 |||| ||| || || ||||| ||||| | || |||| || || | | | || Sbjct 14622 ATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTAC 14681 Query 80595 TACATC-CATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACAT 80653 | || ||| | || ||||| || || || | || |||| | |||||||||| Sbjct 14682 TGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACAT 14740 Query 80654 AGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTG 80713 ||| |||||||| || || | | ||||| |||||| |||| |||||| ||||| | Sbjct 14741 AGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTAG 14800 Query 80714 ATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGT 80757 |||| || || | || || ||||| |||||||| ||||| ||| Sbjct 14801 ATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265585747120