Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq195 414 1e-110 >seq195 Length=28285 Score = 414 bits (458), Expect = 1e-110 Identities = 1272/1965 (65%), Gaps = 126/1965 (6%) Strand=Plus/Plus Query 70986 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 71044 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 71045 ---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATA 71101 |||| ||||| || ||| || ||||||||| |||||||| || |||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 71102 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACA 71161 || | || |||| | |||| || ||||| ||||||||||||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 71162 ATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAA 71221 || | |||| || || ||||||||||| ||||| | |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 71222 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTG 71281 |||||| || ||| || ||||||||||| || | ||| || | || |||| | Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 71282 ATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNN 71341 | || ||| |||||| | ||||| | ||| | ||| | || || || Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 71342 NNNNNNNNNNNNNNATGCCGT----TACTAGCGTATGATCCTGCATATGTATCGTATGGT 71397 || || | | || ||| ||||| | || || || ||||| Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 71398 CCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAA 71457 ||||||| || || | ||| || || |||| ||| ||| ||| || ||||| || Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 71458 ATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG-----------ATAA---- 71502 || || | || || |||| ||| | || |||||||| |||| Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATGAGGTGAGTCAAATGGCATTCTAAGAGATAAAAAG 13430 Query 71503 ---------------------TTTAA---GAGAATAAACGC--GTCTGCTAAT---CCTT 71533 ||||| |||||||| || |||| | |||| Sbjct 13431 GCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCTT 13490 Query 71534 GAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 71593 |||| ||||| || || || | ||||| ||||| || | ||||||| | ||||| Sbjct 13491 GAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGAT 13550 Query 71594 AATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTA 71653 ||||||||| ||| ||||| ||||| | |||||| ||| ||||| ||||| | || Sbjct 13551 AATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGTA 13610 Query 71654 GTTTGAGAAAATCAAATCTCCCATCTATTACAAACACGTTC--AAGGCAACAGATGCCAG 71711 | || |||||||| | | || | | | | || | ||| || |||| | ||| || Sbjct 13611 GCTTTTGAAAATCATAAATGCCTT-TGTCAATAAAA-GTTGGTAAAGCAATACTTGCAAG 13668 Query 71712 ATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACT 71771 ||| ||||| ||||| |||| | | | ||| | || ||||||||||| | |||| Sbjct 13669 ATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAGA 13728 Query 71772 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAA 71830 ||| ||||| || || | ||| | ||||| | ||| | || || ||||| ||||||| Sbjct 13729 ACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAAA 13787 Query 71831 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 71890 | ||||| ||| |||| || || |||| | ||| | ||| || | ||| | | || Sbjct 13788 GCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTCTGT 13846 Query 71891 CCTTTATTATATTCTTGTATCTCTTTTCTCTT-----------TCGTAT----------- 71928 ||||| | |||| || ||| ||| |||| || ||| Sbjct 13847 GCTTTAACA-ATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTT 13905 Query 71929 ---------------TG-TGTATATAATCGT-----------TCGAACTCGTCTCCCCAA 71961 || | |||||||| || || ||||| ||||| || Sbjct 13906 AAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAA 13965 Query 71962 GCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT 72021 ||| ||||| ||||| ||| |||||||| | || ||| ||| || | | Sbjct 13966 ACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCC 14025 Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATG 72080 |||||||||||||| | ||||| ||||| | ||| || ||| |||||||| | || | Sbjct 14026 ACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAAT 14084 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || ||| || |||||| | ||| | | ||||| | |||||| || Sbjct 14085 TTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGG 14144 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||| | || || || | | || || || ||||| || || || || | |||| ||| Sbjct 14145 TTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGC 14204 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 || || || | || || | ||| |||||||||||||| |||| |||||| || || | Sbjct 14205 AGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGC 14264 Query 72261 GATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||||| || ||| | |||||||| | || |||| || || ||||| ||||| || Sbjct 14265 AATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGCCCAATTCCTCCTGCTGTT 14322 Query 72319 TTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCAT 72377 ||| || | || ||| ||||||| |||||||| || || || || |||||| | Sbjct 14323 TTACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTT 14381 Query 72378 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 72437 ||| | | ||| || ||| || | ||| || |||||| ||||||||||| || Sbjct 14382 CATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGT 14441 Query 72438 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTC 72497 ||| ||||| || || | ||||| |||||| ||||| || || ||||||||| ||| Sbjct 14442 AGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTC 14501 Query 72498 TATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAAC 72557 | ||| ||| || || || || |||||||||| |||||| || |||||||| | Sbjct 14502 AACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGC 14561 Query 72558 GATCTTGTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616 | ||| | ||| | || ||| || | || || |||||||| |||||||||| Sbjct 14562 AACCTT-TCCATTAATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAATAGT 14620 Query 72617 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAA 72676 | |||| ||| || || ||||| ||||| | | |||| || || | | | | Sbjct 14621 TATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTA 14680 Query 72677 CTATATC-CATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 72735 || | || ||| | || ||||| || || || | || |||| | ||||||||| Sbjct 14681 CTGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACA 14739 Query 72736 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 72795 |||| |||||||| || || | | ||||| |||||| |||| |||||| ||||| Sbjct 14740 TAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTA 14799 Query 72796 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840 ||||| || || | || || | ||| |||||||| ||||| ||| Sbjct 14800 GATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136196652080