Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq132 82.4 5e-11 >seq132 Length=47203 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || ||||| ||||| || | |||||| || ||| | || | ||||||| Sbjct 38686 CATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTCTT 38745 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| || |||||| | ||| || |||| || |||||| || | |||| Sbjct 38746 TATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGTAA 38805 Query 44085 TTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||||| || || | || ||||| Sbjct 38806 TCGTTTTTCCTGTAAGTGTTTTCAC 38830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776052060984