Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq220 136 9e-27 seq132 136 9e-27 seq74 120 7e-22 >seq220 Length=17533 Score = 136 bits (150), Expect = 9e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | || ||||||||||| ||||| ||||||||||| || | |||||||| Sbjct 2297 TACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCGTCTTC 2238 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || || |||||||||| | |||||| || || || || || || || || || Sbjct 2237 CAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 2178 Query 104470 AATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 ||| ||||||||| ||||| || | ||||| | ||| || |||||||| || || | Sbjct 2177 AAT-TTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATCGTTT 2119 Query 104529 TACCAGTAAGTGTTTTTAC 104547 | || || || |||||||| Sbjct 2118 TTCCTGTTAGAGTTTTTAC 2100 >seq132 Length=47203 Score = 136 bits (150), Expect = 9e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| | ||| || || | || ||||||||||| ||||| || ||||| || ||||| Sbjct 38625 AGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCTT 38684 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || | || ||||||||||| ||||||| |||||||| || || || |||||| Sbjct 38685 CCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTCT 38744 Query 104462 TTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 ||||| |||||| |||||||| ||||| || | || || | || ||||| | || Sbjct 38745 TTATCTTGAATC-TTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGT 38803 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||| || || || ||||||||||| || Sbjct 38804 AATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq74 Length=105699 Score = 120 bits (132), Expect = 7e-22 Identities = 150/202 (74%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| ||||| ||||||||||||||||| ||||||| || | | | ||||| || || Sbjct 40954 TGTAAAGTAGAATCTTTCTGAATATTATAATCAGATAATGTCCGAGCATCTTCCAGCTGC 40895 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTAT-TCCTTCTTTATCCTGAATCTT 104475 ||||||||| |||||| || ||||||||||| | ||| |||| || | ||| || || Sbjct 40894 TTTCCAGCATAAATTAACCGTTGTTGATCAGGCGATATCTCCTCTTTGCTACTG-ATTTT 40836 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||| | ||| | | |||| ||| | ||| || || ||| || ||||| || || Sbjct 40835 ATTTTTAATATTGTTAATTGTATTGCTTGATTCAACTTCAAGTACGATTGTCTTTCCCGT 40776 Query 104536 AAGTGTTTTTAC-AAATATCTG 104556 ||||||||| || | |||| || Sbjct 40775 AAGTGTTTTCACTACATATTTG 40754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393118679464