Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq276 100 3e-16 seq75 86.0 7e-12 >seq276 Length=28560 Score = 100 bits (110), Expect = 3e-16 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 7092 ATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG-TAATTGATCTATACCCTGAC 7150 ||||| |||| ||| | | |||| || || ||| | || ||| || | || |||| Sbjct 20556 ATCATATGGAGATGTCTGAATTTTTTCAATGAT-ATTGGCTAGTTGGTCAACTCCTTGAC 20498 Query 7151 CTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCAT 7210 || ||||| ||| | ||||| ||||| || || || || |||| ||||||||| |||| Sbjct 20497 CTGTATAATCAGTTTTACAATCAATATATTTTGCGCCGAAGTGTCGCCATTGAAAACCAT 20438 Query 7211 AAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAA-ATTAGAT 7269 |||||||||| | ||||||||||| | | | ||||| || || | || || | Sbjct 20437 AAATAGGACCAAGATCACCTTCTTGGTGTTCTGTTAATCC-GATAGAGTCAAGATATTCT 20379 Query 7270 TTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATT-TAAAGAATTTGT 7328 ||||| |||| || ||||| ||||| | |||||| ||| || |||||| ||||| Sbjct 20378 TTTGAACCATTTGCGTCCCATATATGAATTTTTTTTTTCTTTAAGTTCTAAAGAGTTTGT 20319 >seq75 Length=127942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 19357 ACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGAT 19416 |||||| | ||||||||||| |||| || ||||||||| |||||| | || Sbjct 96521 ACCTGAGCTTGGTGATAAGTTCTCTTCACGACATGGTCAAAAAGGTGTCTGTGGTCTTAT 96462 Query 19417 TTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAA 19476 | | |||||||||||||||||| | || |||| ||| || ||| ||||||| || Sbjct 96461 TGTACAACAAGAAGATATGCCTTTTGATCAAAATGGAATAACACCTGATATTATTATGAA 96402 Query 19477 CCCACATGCTTTTCCAAGTCGAATGAC 19503 ||| || | ||||||| ||| ||||| Sbjct 96401 CCCTCACGGTTTTCCATCTCGTATGAC 96375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869333472800