Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq195 407 2e-108 >seq195 Length=28285 Score = 407 bits (450), Expect = 2e-108 Identities = 1275/1965 (65%), Gaps = 126/1965 (6%) Strand=Plus/Plus Query 62180 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 62238 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 62239 ---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATA 62295 |||| ||||| || ||| || ||| ||||| ||||| || || ||||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 62296 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACA 62355 || | || |||| | |||| || ||||| ||||||||||||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 62356 ATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAA 62415 || | ||||| || || ||||||||||| ||||| | |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 62416 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG 62475 |||||| || ||| || ||||||||||| || | | | || | || || ||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 62476 TTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNN 62535 | || ||| |||||| | ||||| | ||| | ||| | || || || Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 62536 NNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTATGGT 62591 ||| | |||||| | | |||||| ||||| | || || || ||||| Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 62592 CCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAG 62651 ||||| | | || | ||| || || |||| || | | ||| || ||||| || Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 62652 ATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGA-ATAA 62709 || || | || || |||| ||| | ||| | |||||||| | | ||||||| | || Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATG-AGGTGAGTCAAATGGC-ATTCTAAGAGATAAAA 13428 Query 62710 ACGCGTCCGC--------------------------TAAT------------------CC 62725 | || || || |||| || Sbjct 13429 AGGCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACC 13488 Query 62726 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62785 |||||||||||| || || || | |||||| ||||| || | ||||||| | ||| Sbjct 13489 TTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGG 13548 Query 62786 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62845 ||||||||||| ||| ||||| ||||| | |||||| | | ||||| ||||| | Sbjct 13549 ATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATG 13608 Query 62846 CAGTTTGAGAAAATCA-AATCGCCCATCT-ATTACAAACATGTTCAAGGCAACAGATGCC 62903 || || |||||||| || ||| | | | || ||| || | ||| ||| | ||| Sbjct 13609 TAGCTTTTGAAAATCATAAATGCCTTTGTCAATA-AAAGTTGGTAAAG-CAATACTTGCA 13666 Query 62904 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 62963 ||||| ||||| ||||| |||| | | | ||| | ||||| |||||||| | |||| Sbjct 13667 AGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTA 13726 Query 62964 CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATA 63022 ||| |||||||| || | ||| | ||||| | ||| | || || ||||| ||||| Sbjct 13727 GAACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATA 13785 Query 63023 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA------- 63075 ||| || || ||| |||| || || |||| | ||| | ||| || | ||| | Sbjct 13786 AAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATAGTTTCTG 13845 Query 63076 --------CGACTCGAGC----CTTTATTATAG-----ATTTGT-ATCT----CCTTTCT 63113 | | ||||| | || || | | |||| | || | ||||| | Sbjct 13846 TGCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTT 13905 Query 63114 CT-------TTCGTATAGTGTATACAATCGT-----------TCGAACTCGTCTCCCCAA 63155 || || | |||| ||| || || ||||| ||||| || Sbjct 13906 AAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAA 13965 Query 63156 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63215 |||| ||| | ||||| ||| | |||||| | || ||| ||| | | | | Sbjct 13966 ACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCC 14025 Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATG 63274 |||||||||||||| | ||||| ||||| | ||| || ||| |||||||| | || | Sbjct 14026 ACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAAT 14084 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||| || || || ||| || |||||| | ||| | | ||||| | |||||| || Sbjct 14085 TTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGG 14144 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 ||| | || || || | | ||||| || ||||| || || || || | |||| ||| Sbjct 14145 TTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGC 14204 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 || || || | || || | ||| ||||||||||| || ||| ||||||| || || | Sbjct 14205 AGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGC 14264 Query 63455 GATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATT 63512 ||||| || ||| | ||||||||| | | |||| || || ||||| ||||| || Sbjct 14265 AATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGCCCAATTCCTCCTGCTGTT 14322 Query 63513 TTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 ||| || | || ||| ||||||| || ||||| || || || ||| |||||| | Sbjct 14323 TTACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTT 14381 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 ||| | | ||| || ||| || | ||| || |||||| ||||||||||| || Sbjct 14382 CATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGT 14441 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63691 ||| ||||| || || | ||||| |||| | ||||| || || ||||||||| || Sbjct 14442 AGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTC 14501 Query 63692 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63751 | ||| ||| || || ||||| |||||||||| ||| || || |||||||| | Sbjct 14502 AACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGC 14561 Query 63752 GATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 | ||| | ||| | || ||| || | || || |||||||| |||||||||| Sbjct 14562 AACCTT-TCCATTAATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAATAGT 14620 Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870 | |||| ||| || || ||||| ||||| | || |||| || || | | | | Sbjct 14621 TATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTA 14680 Query 63871 CTATATC-CATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63929 || | || ||| | || ||||| || || || | || |||| | ||||||||| Sbjct 14681 CTGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACA 14739 Query 63930 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 63989 |||| |||||||| || || | | ||||| |||||| |||| |||||| ||||| Sbjct 14740 TAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTA 14799 Query 63990 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGT 64034 ||||| || || | || || | ||| |||||||| ||||| ||| Sbjct 14800 GATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944412311280