Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq195 197 4e-45 >seq195 Length=28285 Score = 197 bits (218), Expect = 4e-45 Identities = 424/621 (68%), Gaps = 12/621 (2%) Strand=Plus/Minus Query 363426 TCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGG 363485 |||||| ||||| | ||| ||| | || || |||||| ||||||||||||| |||| Sbjct 14580 TCGTATTAATGGAAAGGTTGCAGAAAGACCCCAACATATGATAATGCGTGTTGCAGTTGG 14521 Query 363486 TATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGC-TCGTG 363544 ||||||| | |||||||| || |||||||||||||| ||| | ||| | Sbjct 14520 TATCCATGGTGATGATGTTGAAAAAGCTATTGAAACATATAATCTTATGTCTGCAAAATA 14461 Query 363545 TATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTT 363604 || | || || || | || ||| | | ||||| ||||||| ||||| || | || | Sbjct 14460 TA-TGACACATGCTTCACCTACATTATTTAATGCAGGAACTCCAAATCCTCAACTTTCGT 14402 Query 363605 CTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 | ||||| || ||| ||||| || |||||||| || || || | ||| |||||||| | Sbjct 14401 CCTGCTTCCTAGTAACTATGAAAGATGATTCCATTGAAGGAATTTATGATACACTTAAAA 14342 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCG 363722 ||||| | ||| || | ||||| ||||||| | || || || || |||| Sbjct 14341 CATGTGCCATGATTAGTAAAACAGCAGGAGGAATTG--GGCTCAATGTTCATTGTATTCG 14284 Query 363723 TGC-ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATG 363780 ||| || | ||||| ||| || || | || | | || ||||| | |||| ||| Sbjct 14283 TGCTACTG-GGAGTTATATTGCGGGAACTAATGGTACA-TCTAATGGTATTATTCCTATG 14226 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || | || || |||||||||| | || || ||||| ||||| ||||| || Sbjct 14225 CTCAGGGTATTCAACAATACTGCTCGATATGTTGACCAAGGTGGGAACAAGCGTCCTGGC 14166 Query 363841 GCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGG 363900 || |||||||| ||| | || || ||||| ||||| ||||| || | || || || Sbjct 14165 GCCTTTGCTATTTATATAGAACCATGGCATGCAGATATATTTGAATTCTTGGATCTTCGT 14106 Query 363901 AAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 ||||| ||| || ||||| ||| | || ||| | ||||| || |||| | ||| | | Sbjct 14105 AAAAATCAC-GGTAAAGAAGAAATTCGAGCAAGAGATCTTTTTTATGGCTTATGGATACC 14047 Query 363960 TGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 |||| |||||||| || ||||| ||| | | ||||| | ||||| || |||| Sbjct 14046 TGACTTATTTATGAAACGAGTGGAAGCAAATCAAGATTGGAGCTTATTTTGTCCGAACGA 13987 Query 364020 ATGTCCAGGTCTTTCCGATGT 364040 | || ||||| |||||| Sbjct 13986 AGCCCCTGGTCTAGACGATGT 13966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347621679956