Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq195 398 1e-105 >seq195 Length=28285 Score = 398 bits (440), Expect = 1e-105 Identities = 1273/1965 (65%), Gaps = 126/1965 (6%) Strand=Plus/Plus Query 62035 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT-AATATCTTCTGGAAGGTTTG 62093 |||||| | | ||||| | ||||||||| | ||||| ||| ||| |||||| | | Sbjct 12896 CTTTTGAGACAACTCCCATACAGTTTTATATAA-CGCTTTAATTTCTGCTGGAATACTAG 12954 Query 62094 ---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATA 62150 |||| ||||| || ||| || ||| ||||| ||||| || || ||||||||| | Sbjct 12955 GTATATTTTGAATAGAGCCATTATTTGCAATAATTCTATTTTTCATAATATCATTCCACA 13014 Query 62151 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACA 62210 || | || |||| | |||| || ||||| ||||||||||||||||| | | Sbjct 13015 ATCCTAAATCAACTAAATCCTTAAGTAGCCATGGATTTACTACTTGAAATTCTCCTGCAA 13074 Query 62211 ATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAA 62270 || | ||||| || || ||||||||||| ||||| | | |||| ||| || | | Sbjct 13075 GGACACGCCGAGAATATATGTTACTGGTATATGGTTCAAAACACTCGTTAAAACCAAGGA 13134 Query 62271 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG 62330 |||||| || ||| || ||||||||||| || | | | || | || || ||| Sbjct 13135 TTTGAGATGTACTTGCGGTAGGCATAGGTGCTACGAGAAGAGAGTTACGGAGGCCATATC 13194 Query 62331 TTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNN 62390 | || ||| |||||| | ||||| | ||| | ||| | || || || Sbjct 13195 GTGCAATATTAACTTTTAAACTATCCCAGTCCCATAAATCTGTAGGAACTACGTTCCACA 13254 Query 62391 NNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTATGGT 62446 ||| | |||||| | | |||||| ||||| | || || || ||||| Sbjct 13255 TATCATATTGCAAAATACCTTGGGATGCTGGCG----ATCCTTCGTAGGTTTCATATGGA 13310 Query 62447 CCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAG 62506 ||||| | | || | ||| || || |||| || | | ||| || ||||| || Sbjct 13311 CCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAAT 13370 Query 62507 ATCTTCTTATTTAGATCTTGCGCTTCCAGGCTA-TCAAATGG-----------ATAA--- 62551 || || | || || |||| || | ||| | |||||||| |||| Sbjct 13371 ATTTTAATGTTAAGCTCTTTTGCATG-AGGTGAGTCAAATGGCATTCTAAGAGATAAAAA 13429 Query 62552 ----------------------TTTAA---GAGAATAAACGC--GTCTGCTAAT---CCT 62581 ||||| |||||||| || |||| | ||| Sbjct 13430 GGCATCAGCAAGTCCTACTCTTTTTAACATGAGAATAATTTATAGTTTGCTTTTGAACCT 13489 Query 62582 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62641 ||||||||||| || || || | |||||| ||||| || | ||||||| | |||| Sbjct 13490 TGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCACAGGA 13549 Query 62642 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 62701 |||||||||| ||| ||||| ||||| | |||||| | | ||||| ||||| | Sbjct 13550 TAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATCATGT 13609 Query 62702 AGTTTGAGAAAATCA-AATCGCCCATCT-ATTACAAACATGTTCAATGCAACAGATGCCA 62759 || || |||||||| || ||| | | | || ||| || | || |||| | ||| | Sbjct 13610 AGCTTTTGAAAATCATAAATGCCTTTGTCAATA-AAAGTTGGTAAA-GCAATACTTGCAA 13667 Query 62760 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62819 |||| ||||| ||||| |||| | | | ||| | ||||| |||||||| | |||| Sbjct 13668 GATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCATAAATTAG 13727 Query 62820 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAA 62878 ||| ||||| || || | ||| | ||||| | ||| | || || ||||| |||||| Sbjct 13728 AACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCATCTTTATAA 13786 Query 62879 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 62938 || || || ||| |||| || || |||| | ||| | ||| || | ||| | | || Sbjct 13787 AGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA-GTTTCTG 13845 Query 62939 GCCTTTATTA--TAGATTTG------TATCT--CTTTTCTCTTTCGTATAG--------- 62979 ||||| | | || ||| | ||| || | | |||| |||| Sbjct 13846 TGCTTTAACAATTCGAGTTGCTCGTTTTTCTTGCTCATATTTTTCATATAAAACCTTTTT 13905 Query 62980 ------------------TGTATACAATCGT-----------TCGAACTCGTCTCCCCAA 63010 | |||| ||| || || ||||| ||||| || Sbjct 13906 AAAAATAAGTTAACATGATATATATAATAGTAGGAAAAAACCTCAAACTCTTCTCCGTAA 13965 Query 63011 ACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63070 |||| ||| || ||||| ||| | |||||| | || ||| ||| | | | | Sbjct 13966 ACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCC 14025 Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAATAGATCTCTGGTTCTATG 63129 |||||||||||||| | ||||| ||||| | ||| || ||| |||||||| | || | Sbjct 14026 ACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAAAAAGATCTCTTGCTCGAAT 14084 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||| || || || ||| || |||||| | ||| | | ||||| | |||||| || Sbjct 14085 TTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGG 14144 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63249 ||| | || || || | | ||||| || ||||| || || || || | |||| ||| Sbjct 14145 TTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGC 14204 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 || || || | || || | ||| |||||||||||||| ||||||||||| || || | Sbjct 14205 AGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGC 14264 Query 63310 GATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATT 63367 ||||| || ||| | ||||||||| | | |||| || || ||||| ||||| || Sbjct 14265 AATATAACTCCCAGTAGCACGAATACAATGAACATTG--AGCCCAATTCCTCCTGCTGTT 14322 Query 63368 TTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCAT 63426 ||| || | || ||| ||||||| |||||||| || || || || |||||| | Sbjct 14323 TTACTAATCATGGCACAT-GTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTT 14381 Query 63427 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63486 ||| | | ||| || ||| || | ||| || |||||| ||||||||||| || Sbjct 14382 CATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGT 14441 Query 63487 AGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63546 ||| ||||| || || | ||||| |||| | ||||| || || ||||||||| || Sbjct 14442 AGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATATGTTTCAATAGCTTTTTC 14501 Query 63547 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606 | ||| ||| || || ||||| |||||||||| ||| || || |||||||| | Sbjct 14502 AACATCATCACCATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGC 14561 Query 63607 GATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 | ||| | ||| | || ||| || | || || |||||||| |||||||||| Sbjct 14562 AACCTT-TCCATTAATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAATAGT 14620 Query 63666 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63725 | |||| ||| || || ||||| ||||| | || |||| || || | | | | Sbjct 14621 TATATGTAAAATCACGATCGTAGATAATTGCACTGTCTAGTTCATTGGCATGTCTCATTA 14680 Query 63726 CTACATC-CATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACA 63784 || || ||| | || ||||| || || | | || |||| | ||||| ||| Sbjct 14681 CTGTTTCATATGTTTTTA-GAGAAATCATTGGGGATGGCTTGTTATTTCTTGGATTAACA 14739 Query 63785 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTT 63844 |||| |||||||| || || | | ||||| |||||| |||| ||||| ||||| Sbjct 14740 TAGTGATATAAATCCGAAATAACATGAGAAAATACTTTTTTAGTTTGCTTGTGAAGATTA 14799 Query 63845 GATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGT 63889 ||||| || || | || || | ||| |||||||| ||||| ||| Sbjct 14800 GATACTGCAATACGTGCTGCCAAAATAGCATAATCGGGATGCTGT 14844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629164496800