Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq220 104 2e-17 seq132 87.8 2e-12 >seq220 Length=17533 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 ||||| ||| | || || ||| | || ||| | |||||||| || || || || ||||| Sbjct 2100 GTAAAAACTCTAACAGGAAAAACGATAACACTAGAAGTGGAATCATCAGATACAATCGA- 2158 Query 25071 TCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126 || || |||||||| ||| ||||| || || |||||||| ||||||||||| | Sbjct 2159 -CAATGTTAAAAGCAAAAT-TCAA-GACAAGGAGGGCATTCCACCGGACCAACAGCGTTT 2215 Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 |||||||||||||| || | ||||| | || || | || |||||||| || || Sbjct 2216 AATTTTTGCCGGCAAGCAGCTGGAAGACGGCCGGACGCTATCTGACTACAATATCCAGAA 2275 Query 25187 AGAATCCACGCTACAT 25202 |||||| || || ||| Sbjct 2276 AGAATCGACCCTTCAT 2291 >seq132 Length=47203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 25010 TGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA 25069 || ||| |||| || || ||| | || || | || ||||||||||| ||||| || || Sbjct 38829 TGAAAACACTT--ACAGGAAAAACGATTACTTTGGAGGTGGAGTCGTCAGACACAATTGA 38772 Query 25070 GTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || |||||| | ||| || ||||||||||||||||| || ||||| ||| Sbjct 38771 --CAATGTCAAAAGCAAGAT-TCAA-GATAAAGAAGGGATTCCACCGGATCAACAACGGC 38716 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || ||||| || || || || || |||| | || | ||||||||||| || | Sbjct 38715 TAATCTTTGCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAGA 38656 Query 25186 AAGAATCCACGCTACA 25201 ||||||| || || || Sbjct 38655 AAGAATCGACTCTTCA 38640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326109335770