Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq132 145 1e-29 seq220 140 6e-28 >seq132 Length=47203 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||| | ||| || || || ||||| ||||| || ||||| || Sbjct 38616 CCACCACGGAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAA 38675 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || ||||| || |||||||| || || || || || | |||||| || |||||| Sbjct 38676 AGTGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGA 38735 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||||||||| ||||| || || ||||||| || || || Sbjct 38736 ATCCCTTCTTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACC 38795 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||||| || || |||||||| || || || || || Sbjct 38796 TCCAAAGTAATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq220 Length=17533 Score = 140 bits (154), Expect = 6e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| ||||| | || || || || ||||| ||||| || || || || Sbjct 2314 CCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGAT 2255 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || ||||| | |||||| ||||| || || | | |||||||| |||||| Sbjct 2254 AGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGA 2195 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| |||||||||||||| ||||| || || ||||| || |||| |||||| || Sbjct 2194 ATGCCCTCCTTGTCTTGAAT-TTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCAC 2136 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 ||| | || || |||||||| || || || || || Sbjct 2135 TTCTAGTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618275739760