Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq120 132 1e-25 >seq120 Length=60319 Score = 132 bits (146), Expect = 1e-25 Identities = 162/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 334142 ATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACC 334201 ||| ||||| ||||| |||||||||| | || ||| || ||||| | ||||| Sbjct 29183 ATCATGTTCGACGTATACAGTTTTCAATTC-----CATAGGA-AATCCTTCTACTTGACC 29130 Query 334202 GTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 334261 ||| |||||| || | ||||||||||| |||| || || || ||||| | ||| || Sbjct 29129 ATTCGAAATAGCACGAAGAAGAGTTGATTTTCCCGAGCCATTAGGACCACATAAACCATA 29070 Query 334262 GCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGC 334321 | | ||||| || || || || ||| |||| | |||||||||| |||||||||| Sbjct 29069 TCTGCGACCACGTTTGAGGTTTAAAAACGTTCTGTTTAAAAGAATTTTTGCACCATATGC 29010 Query 334322 CAGAGAAAATTCACAATCACACAGATCCTCACCGACTTCT 334361 |||||||| ||||||| ||||| ||| ||||| ||||| Sbjct 29009 GAGAGAAAACTCACAATTACACAAATCATCACCCTCTTCT 28970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874941227300