Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq195 116 4e-21 >seq195 Length=28285 Score = 116 bits (128), Expect = 4e-21 Identities = 242/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 114354 |||||| ||||| | |||||| ||||||||||| |||| ||| | | ||| ||||| Sbjct 13486 ACCTTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCAC 13545 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414 |||||| |||| ||| |||| | |||||| |||| | | ||||| ||||| | || Sbjct 13546 AGGATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATC 13605 Query 114415 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 ||| ||||||| ||||| || ||| ||| | | | | | || | || || Sbjct 13606 ATGTAGCTTTTGAAAATCATAAATGC------CTTTGTCAATAAAAGTTGGTAAAGCAAT 13659 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 || ||||| || |||| ||||| | | ||||| || ||||| || || Sbjct 13660 ACTTGCAAGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCA 13719 Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAG-TTCTTTTGATTTGACTTTGTGTTACACGCAT 114593 ||||| |||| || || || |||||| ||||| ||||| || || || || |||| Sbjct 13720 TAAATTAGAACATTTGATAGT-CCCAAGATTCTTCTGATTCGATTTACGATTGCATGCAT 13778 Query 114594 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651 | || |||||||| | || | || ||||| || || | | ||||| || | ||| Sbjct 13779 CTTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCA 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350926842640