Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq220 120 3e-22 >seq220 Length=17533 Score = 120 bits (132), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| ||||||||||| || || ||||| || | | || || ||||||| Sbjct 2296 ACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCGTCTTCC 2237 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||||||| |||| | ||||| ||||| || ||||| || || || ||||| Sbjct 2236 AGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 2177 Query 64355 ATTTTTTGCTTT--ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | ||||||||| ||| || | |||||| | |||||||||| |||| || | Sbjct 2176 A--TTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATCGTTT 2119 Query 64413 TGCCGGTCAAAGTTTTTAC 64431 | || || | ||||||||| Sbjct 2118 TTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642564089520