Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq220 84.2 2e-11 >seq220 Length=17533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || || || | ||| | | | || || || || || |||||||| Sbjct 2314 CCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGAT 2255 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || |||| | | |||| ||||||||||||||| || Sbjct 2254 AGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGA 2195 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| |||||| |||| | | || || | || |||| Sbjct 2194 ATGCCCTCCTTGTCT-TGAATTTTGCTTTTAACATTGT-CGATTGTATCTGATGATTCCA 2137 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 | || | || | |||||| || || ||||||||||| Sbjct 2136 CTTCTAGTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260179225760