Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq132 118 1e-21 seq220 84.2 2e-11 >seq132 Length=47203 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| ||| || || || || || ||||| || |||||||| ||||| Sbjct 38613 ATGCCACCACGGAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCA 38672 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || ||||| || | || | ||||| || ||||| Sbjct 38673 GAAAGTGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGT 38732 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||||||||| || ||||| || | ||||| || ||||| Sbjct 38733 GGAATCCCTTCTTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGACTCC 38792 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || || | ||||| |||||| || || || ||||| || Sbjct 38793 ACCTCCAAAGTAATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq220 Length=17533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 45110 TATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC 45169 ||| || || || || | || || ||||| || || ||||| || |||||||| || || Sbjct 2318 TATACCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTC 2259 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 | || || |||| || || || || | || || || || |||||||| Sbjct 2258 AGATAGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGG 2199 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 |||||||| || || ||||||||||| ||| | || | || || || || || Sbjct 2198 TGGAATGCCCTCCTTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTC 2139 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||||| || || | |||||| || |||||||||||||| Sbjct 2138 CACTTCTAGTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001177285680