Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq195 120 4e-22 >seq195 Length=28285 Score = 120 bits (132), Expect = 4e-22 Identities = 244/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 |||||| ||||| | |||||| ||||||||||| |||| ||| | | ||| ||||| Sbjct 13486 ACCTTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCAC 13545 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 |||||| |||| ||| |||| | |||||| |||| | | ||||| ||||| | || Sbjct 13546 AGGATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATC 13605 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 ||| ||||||| ||||| || ||| ||| | | | | | || | || || Sbjct 13606 ATGTAGCTTTTGAAAATCATAAATGC------CTTTGTCAATAAAAGTTGGTAAAGCAAT 13659 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || ||||| || |||| ||||| | | ||||| || ||||| || || Sbjct 13660 ACTTGCAAGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCA 13719 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAG-TTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 ||||| |||| || || || |||||| ||||| ||||| || || || || |||| Sbjct 13720 TAAATTAGAACATTTGATAGT-CCCAAGATTCTTCTGATTCGATTTACGATTGCATGCAT 13778 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 | || || |||||| | || | || ||||| || || | | ||||| || | ||||| Sbjct 13779 CTTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCATA 13838 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||||||| | || | ||||||||||| ||||||||||| || | || |||||||| Sbjct 13250 CCACATATCATATTGCAAAATACCTTGGGATGCTGGCGATCCTTCGTAGGTTTCATATGG 13309 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || || | | ||||||||| | || || || ||||| ||||| || || ||||| Sbjct 13310 ACCTTCTTCTTGTGCCAATTCGCATGATGCTTCTAGAGCTGCATGATATATAGTTTCAAA 13369 Query 116184 AAT 116186 || Sbjct 13370 TAT 13372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504454555280