Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq220 102 2e-16 seq132 91.5 3e-13 >seq220 Length=17533 Score = 102 bits (112), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || || ||||| || || |||| |||||||||| | |||| || |||||| Sbjct 2296 ACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCGTCTTCC 2237 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| ||||| || || | |||||| |||||||| ||| || || || ||| Sbjct 2236 AGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 2177 Query 199541 ATCTTTTGC--TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 | |||||| || || |||| || |||| || ||| || || | || ||||| | Sbjct 2176 A--TTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATCGTTT 2119 Query 199599 TACCCGTGAGAGTTTTCAC 199617 | || || |||||||| || Sbjct 2118 TTCCTGTTAGAGTTTTTAC 2100 >seq132 Length=47203 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || |||||||||||||| |||||||| || | | |||||||| ||||| Sbjct 38716 CTAATCTTTGCTGGAAAGCAGTTGGAGGATGGAAGAACACTTTCTGATTACAATATCCAG 38657 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| || |||||||||||||| ||| | || || Sbjct 38656 AAAGAATCGACTCTTCACCTTGTATTGCGGCTCCG 38622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916192433986