Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq103 661 0.0 seq325 159 3e-33 seq189 132 4e-25 seq78 132 4e-25 seq151 122 7e-22 seq283 87.8 1e-11 >seq103 Length=78968 Score = 661 bits (732), Expect = 0.0 Identities = 1093/1566 (70%), Gaps = 16/1566 (1%) Strand=Plus/Plus Query 517163 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 517222 |||||| |||||| | |||||||| || | || || | || | ||| | ||| Sbjct 73837 GCTTCTTGAATCATACGCTCAATTTCTTCCTTTGATAAACGACCTTTTTCATTCTTGATA 73896 Query 517223 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 517282 |||||||| | | ||| ||| ||| ||| | |||| ||||||||||| ||| Sbjct 73897 GTAATATTGCTTGTTTTACCTGTCCCTTTCTCAACAGCAGAGACATTAAGAATTGAATTA 73956 Query 517283 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 517342 ||||| | ||||| || |||||||||||||| || || | | |||||||| || ||| Sbjct 73957 GCATCAATGTCAAAAGTAACTTCAATTTGAGGAACACCACGAGGTGCAGGTGGAATGCCT 74016 Query 517343 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 517402 |||| |||| ||| || | |||||| || | ||||| || || | Sbjct 74017 GTTAAATCAAATTGTCCAAGTAAGTGGCAATCTTTGGTACGTGCACGTTCGCCTTCATAT 74076 Query 517403 ATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTA 517462 | ||||||| || ||| || ||||||| |||||| | ||| ||| ||| |||||| Sbjct 74077 ACTTGGATAAGTACACCAGGCTGGTTATCTGCATAAGTAGAAAAGACTTCGGACTTTTTA 74136 Query 517463 CAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAA 517522 || | ||||| || | | ||||| | ||||| | ||| ||||| ||||| | | Sbjct 74137 GTCGGGACAGTTGTATTCCGTTTAATAAGTGTTGTCATCACACCGCCTGCAGTTTCAATA 74196 Query 517523 CCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA 517582 || | || ||||| | ||||||| | || || | |||| || ||| || | Sbjct 74197 CCCATTGAGAGAGGCGCCACATCAAGCAAGAGTATGTCTTGAGTTTGTTCCGATGTGTCT 74256 Query 517583 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 517642 || ||||||||| ||||||| || |||||||| |||||||||||||| ||||| | Sbjct 74257 CCTGAAAGAATAGCAGCTTGAACTGCCGCACCATAGGCAACAGCTTCATCTGGATTGATC 74316 Query 517643 GTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTA---GGA 517699 ||| |||| | | ||| ||||| ||||||| ||| | || ||| | || ||| Sbjct 74317 GTTCTATTTGGCTCTTTTCCATTAAAAAAATCACAAACCAATT-TCTGAA--TACGCGGA 74373 Query 517700 ATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAA 517759 ||||| | || || ||||| |||||||||||||| || ||||||||| | ||| ||| Sbjct 74374 ATACGCGTAGAACCACCAACCAATACAATTTCATGAACACTTGATTTATCAATTTTAGAA 74433 Query 517760 TCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCT 517819 || | |||||| ||||| ||||| | | ||||| | ||| |||||||||| Sbjct 74434 TCACGAAGAACTTTCTCAACTGGTTCCATTGTTCCCCTAAAAAGATCTTGACAAAGTTCT 74493 Query 517820 TCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACT 517879 || ||| ||| | ||||| || || ||||||||||||| || || ||||||| | Sbjct 74494 TCAAATCGAGCACGAGTAATAGAAGTATATAAATCAATTCCTTCAAATAAGGAATCAATT 74553 Query 517880 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 517939 || || | || || || || || || || | ||||||||||| ||||||||||| | Sbjct 74554 TCTATACTCGTCTGTGTTGATGATGAAAGAGTCCGTTTAGCACGCTCACATGCTGTTCGA 74613 Query 517940 AGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--TCTGTTTTATATTTTCTCTTGAAAT 517997 || | || | | | ||| ||| | ||| ||| | || | ||| | || || | Sbjct 74614 AGCCGACGAAGAGATCGTGC--ATTCCCTGAAAGATCTTTCTTGTGTTTGCGTTTAAATT 74671 Query 517998 CTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 518057 | ||| | ||||||||||||| ||||||||||| |||||||| | |||| | Sbjct 74672 CAGCAATGAAGTGGTTTACAAGACGATTGTCAAAATCTTCTCCTCCCAAATGGGTATCGC 74731 Query 518058 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGG 518117 ||| || ||| | |||| |||| ||| ||||| | || || | | ||| ||| | Sbjct 74732 CTGCGGTTGCTTTGACTTCAAAAATTCCTTCTTCGATAGTTAATAACGATACGTCAAAAG 74791 Query 518118 TTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGAC 518177 |||| || || | |||||||||||| |||||| |||| || | || ||||| |||| Sbjct 74792 TTCCTCCTCCAAGATCAAAAATAAGCACATTCTTTTCATTTGATGTCTTCTTATCTAGAC 74851 Query 518178 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 518237 |||| |||| || || || || |||||||| ||||| | |||||||| | || |||| Sbjct 74852 CATATGCAATGGCTGCTGCTGTAGGTTCATTGATAATACGTAAAACATTCAATCCTGCAA 74911 Query 518238 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 518297 | |||||| ||||| || || |||| |||||||| || |||||||| || || || | Sbjct 74912 TCAATCCTGCGTCTTTCGTAGCCTGTCGCTGTGAATCATTGAAATATGCTGGGACCGTGA 74971 Query 518298 TAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTA 518357 |||| |||| | |||| | |||| ||| || |||| || |||||||| | | Sbjct 74972 TAACAGCATTGGAAACTTTAGTCCCAAGATACGCTTCTGCCACTTCCTTCATTTTTGTAA 75031 Query 518358 AAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTTTGATATGATACT 518416 | |||||||||||| | || || | | | || || || || || |||| || Sbjct 75032 GGACCATTGATGAAATCTCCTCCGGCGTA-AATGTTTTAATATCCCCTTTATATTCAACC 75090 Query 518417 TCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGAT 518476 | || ||| || || | ||| | ||||||||||| ||||| | ||||||||||||| Sbjct 75091 TGAATATAAGGCTTCTGACCTTTGTCTATAACTTTAAAAGGCCAATGTTTCATATCTGAT 75150 Query 518477 TGAACACTT-TGG-TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTAT 518534 || ||||| ||| || || | | ||||| | |||||||||||||| | |||| Sbjct 75151 TG--CACTTCTGGATCCCCGAATTTCCGTCCAATCAGACGTTTTGCATCAAATACTGTAT 75208 Query 518535 TGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTG 518594 || |||||| |||||| | || | ||| |||||||||||||| || ||||| |||| Sbjct 75209 TGCATGGATTCATTGCAACCTGGTTTTTTGCTGCATCTCCAATAAGTCTTTCTGAATCTG 75268 Query 518595 TAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTT 518654 |||| | ||||||||||| || || ||||| |||||||||||||| ||||| || || | Sbjct 75269 TAAACGCTACATATGATGGTGTGGTTCGATTCCCTTGATCATTCGCTATAATCTCTACAT 75328 Query 518655 TACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAA 518714 || | |||||| || || || ||| || ||||||||||||||||||| |||| Sbjct 75329 GTCCTGATATCCATACTCCCACGCATGAAAACGTGGTTCCTAAATCAATACCAACTGCAA 75388 Query 518715 TTTTAT 518720 |||| Sbjct 75389 AATTAT 75394 Score = 91.5 bits (100), Expect = 1e-12 Identities = 199/296 (67%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 322081 ATAGTCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATG--TTCTAAAT 322138 || |||||||||||||||||||||||| |||| || | |||| || ||| ||| Sbjct 74697 ATTGTCAAAATCTTCTCCTCCCAAATGGGTATCGCCTGCGGTTGCT-TTGACTTC-AAAA 74754 Query 322139 ACTCCATTTGAGATATTCATTAACGAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACA 322198 | ||| | | |||| | | |||||| || || ||||| || |||| | ||| ||| | Sbjct 74755 ATTCCTTCTTCGATAGTTAATAACGATACGTCAAAAGTTCCTCCTCCAAGATCAAAAATA 74814 Query 322199 ATTACGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCT 322258 | | || | |||| ||| || | | | ||| ||| ||||||| ||| Sbjct 74815 AGCA---------CATTCTTTTCATTTGATGTCTTCTTATCTAGACCATATGCAATGGCT 74865 Query 322259 GCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCA 322318 ||||| || |||||||| || || | ||||| || || ||||| | | || Sbjct 74866 GCTGCTGTAGGTTCATTGATAATACGTAAAACATTCAATCCTGCAATCAATCCTGCGTCT 74925 Query 322319 AGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTT 322374 || || |||| ||||| ||||| ||||||||||| || || ||||| || || Sbjct 74926 TTCGTAGCCTGTCGCTGTGAATCATTGAAATATGCTGGGACCGTGATAACAGCATT 74981 >seq325 Length=14064 Score = 159 bits (176), Expect = 3e-33 Identities = 366/544 (67%), Gaps = 28/544 (5%) Strand=Plus/Minus Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 635465 ||||| | || || ||||| || ||||| |||||||||| || ||||| || || || | Sbjct 12257 ATGCTAATAAAGCTGGAACTAAGGAAGGTCATAAATGTACACTTATTTTAACTGAAGGTG 12198 Query 635466 ATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGAG 635525 |||| || ||| | || |||||||||||| || ||| |||| | ||||||| ||||| Sbjct 12197 ATTCTGCAAAATCTTTAGCTATGTCTGGTATTGGTGTGGTTGGTCGCGATTATTTTGGAG 12138 Query 635526 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCTG 635585 ||| || |||||||||||| | || |||||| | || || | | || ||||| Sbjct 12137 TTTATCCGCTTAGAGGAAAATTGTTAAATGTTCGTGAAGCATCACATGAACAAATTAGCA 12078 Query 635586 ATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTATG 635645 | |||| ||||||| || || || ||||| | || ||| |||| ||| || ||| Sbjct 12077 AAAATGCTGAAATTAATGCTATAAAGCAAATTATGGGCCTTCAACATAAAAAGGTATATA 12018 Query 635646 AT----GATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAGATGTT 635701 | ||| || ||||| ||||| | | |||||| | ||||||||||| | Sbjct 12017 CTTCTACTTCTGAA----TTACGCTATGGGCATTTGATGATTATGACTGATCAAGATCAT 11962 Query 635702 GATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCCATCTCTC 635761 |||||| ||||| || || || || || |||| | | | ||| | |||||| | Sbjct 11961 GATGGGAGTCATATTAAGGGTTTGATTATTAATTATTTGGAAAGTTCGTTTCCATCTTTA 11902 Query 635762 GT-TAAATACGAAGGGTTTATTCAATCA-TTTGCAACTCCACTATTAAAAGCCACCAAAG 635819 | | |||| ||| || || | | | ||| |||||| | ||||||| || |||| Sbjct 11901 TTGGAGATAC--CGGGATTTTTAATTGAGTTTATTACTCCAATTGTAAAAGCAACAAAAG 11844 Query 635820 GAA--AAGGTAAAACAAAACAAGTTGTTGCATTTACAAGTCCCCAATCTTTTGAGGAATG 635877 ||| ||| |||| | ||| ||||| | |||| | | |||| | || Sbjct 11843 GAACTCAGG------AAAAGACGTT-----TTTTACTA-TCCCTGA--GTATGAGTATTG 11798 Query 635878 GAAAAAGGAAAACAATGACGGAAAAGGATGGTCAATCAAATATTACAAAGGATTAGGTAC 635937 ||| || || | | ||||| ||| ||| |||||||| |||||||||||||| Sbjct 11797 GAAGGAGTCTGTTGATAATGCTAAAGGGTGGAAAATAAAATATTATAAAGGATTAGGTAC 11738 Query 635938 CAGT 635941 ||| Sbjct 11737 TAGT 11734 >seq189 Length=26291 Score = 132 bits (146), Expect = 4e-25 Identities = 247/361 (68%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 517595 GCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGT 517654 |||||||||| || ||||||||||||||| ||| |||||||| | | || ||| || Sbjct 6984 GCTGCTTGAACTGCTGCACCATATGCAACACATTCGTCAGGATTGATGGATTTATTAAGA 6925 Query 517655 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT--TACCTTAGGAATACGAGATGATC 517712 ||| || | ||||||| |||| |||| | ||| | |||||||||| ||||| Sbjct 6924 GATTTTCCGTCAAAAAAATCAGAAACGAGTTTTTGAATACGT--GGAATACGAGTTGATC 6867 Query 517713 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTT 517772 | ||||| || ||||| |||| | | |||||||| | ||||||||| | ||||| Sbjct 6866 CACCAACCAAAACAATATCATCAATTTTAGATTTATCTATTTTTGAATCTTTAAGAACTT 6807 Query 517773 TTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTC 517832 ||||||| || |||||| | | ||| | | |||| || ||||| || || | Sbjct 6806 TTTCAACAGGCTCAAGAGTTGATTGAAAGACTTTTGAATTAATCTCTTCAAAACGTGCAC 6747 Query 517833 TAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTT 517892 | ||| | | | | || ||| || || || || |||| ||||| ||||||| Sbjct 6746 GATTAATATTAATACTAAGATCTTGACCATCTTTTAATGACTCAATTTCAACTGTAGTTT 6687 Query 517893 GAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 517952 | || | |||| || | ||||||||||| ||||| || |||| | ||||| | Sbjct 6686 GTGTAACACTGGATAATGTTCTCTTAGCACGTTCGCATGCAGTTCTTAAACGCCGTAAAG 6627 Query 517953 C 517953 | Sbjct 6626 C 6626 Score = 109 bits (120), Expect = 4e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 ||||||| || || || |||| |||||||||||| ||||| ||||||| || || Sbjct 6377 TACATCAAATGTACCGCCCCCCAAATCAAAAATAAGAACATTTTTTTCTTTATCAGATTT 6318 Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 | |||||||||||| |||| || || ||||| || ||||| ||||| | | ||| || Sbjct 6317 TGAATCAAGACCATATGCAATTGCTGCCGCAGTAGGCTCATTGATAATACGGAGAACGTT 6258 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 | ||| ||||| | |||||||| || || | | | || ||| ||||||||| Sbjct 6257 TAAACCGGCAATAGTGCCTGCATCCTTTGTTGAAAGACGCTGACTATCAGAAAAATATGC 6198 Query 518287 AGGAACAGTAATAACGGC 518304 || || |||||||| || Sbjct 6197 TGGTACTGTAATAACTGC 6180 >seq78 Length=127363 Score = 132 bits (146), Expect = 4e-25 Identities = 313/464 (67%), Gaps = 8/464 (2%) Strand=Plus/Plus Query 518250 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 |||| || ||||| | ||| | ||| || ||||| || || || |||| || |||| | Sbjct 120009 CTTTGGTTGCTTGACGTTGCGCATCATTGAAATAAGCGGGTACTGTAACTACCGCATGGG 120068 Query 518310 TTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATG 518369 | || ||||| ||| || || ||| ||||||||||| | | ||| | | Sbjct 120069 TAACCGTCCGACCAAGATATGCTTCAGCTATTTCTTTCATTTTACGAAGCACCATAGCAG 120128 Query 518370 AAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTG--ATATGATACTTCAAAATATGG 518427 |||||| ||| || | | | | | ||| | | |||| | ||||||| || || Sbjct 120129 AAATTTCTTCCGGTGTAAACATCCTCTTTTC-TCCAGCAATATTA-ACTTCAACATGCGG 120186 Query 518428 TTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG 518487 || | || || ||| || |||||||| | |||||||| | ||||| || Sbjct 120187 CTTCCCATCACGATGCGAAACCTTGAATGGCCAATGCTTCATATCCGCCTGAACGTCTTC 120246 Query 518488 GTCATTAAAATCTC-TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAA 518546 |||| ||| |||| | ||||| | || || ||||||||| ||| || |||||| Sbjct 120247 CTCATCAAA-TCTCCTGCCAATCAGCCGCTTGACATCAAAAACAGTGTTTTGTGGATTTG 120305 Query 518547 TTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACAT 518606 | | |||||| | ||| || ||||| |||| || | ||| || ||||| | ||||| Sbjct 120306 TCGGAGCTTGGTTTTTCGCAGCATCCCCAACCAACCGCTCTTCATCAGTAAAGGCAACAT 120365 Query 518607 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCC 518666 |||| || ||| | ||||| || ||||| || || | |||||||||| || | | Sbjct 120366 ATGACGGCGTTATACGATTGCCCTGATCGTTTGCCAAAATTTCAACTCGTCC-TGACAAC 120424 Query 518667 ATA-CACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 ||| |||| ||||| | |||| || || |||||||||||||| Sbjct 120425 ATAACACCAACACATGAATAAGTCGTCCCCAAATCAATACCAAT 120468 Score = 118 bits (130), Expect = 8e-21 Identities = 392/599 (65%), Gaps = 18/599 (3%) Strand=Plus/Plus Query 517141 ATCTGCTTCTTCAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGA 517199 |||| | ||| |||| |||| | || || |||||| | |||||||| |||| || | Sbjct 118773 ATCTTCATCTGCAAACTTCTCT-GCATCCTGAATCATACGCTCAATTTCCTCTTGCGACA 118831 Query 517200 ATCTTCCGCGATTATTAGTAATAGTAAT--ATTCTTGGATTTGTTTGTTGATTTATCAGC 517257 | || || ||| | |||||||| ||||| ||||| |||||| | Sbjct 118832 GCCGACCCTTATCATTCTTGATAGTAATTGATTCT--GATTTACCACCACCTTTATCTGT 118889 Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 |||| ||| | | | ||||||||||| | ||||| || |||||||| ||||| || Sbjct 118890 TGCAGACACTGTTAATACCCCATTGGCATCAAGCTCAAACGTCACTTCAATCTGAGGCAC 118949 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | |||| || || || ||| || | |||| | |||| | ||||||||||| Sbjct 118950 ACCACGTGGAGCTGGAGGTATTCCTGTTAACTCAAATTTGCCCAACATGTTATTATCTTT 119009 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | || || ||||| || | ||| || ||| | ||||||||| || Sbjct 119010 TGTAAGAGAGCGCTCGCCCTCAAACACTTGAATCAAAACGGTATCTTGATTATCAGATGC 119069 Query 517438 AGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 ||| | ||| | |||| ||||| |||||| ||| || | ||| | || | Sbjct 119070 AGTGGAAAAGA-TCTGTGATTTACGTGTCGGAATTACTGTATTGCGTGAAATTAGTTTAG 119128 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | ||||| | ||| || | || | || | ||| | ||||| |||| ||||| Sbjct 119129 TCATTACGCCACCAGTTGTCTCAATTCCTAAAGTCAATGGATTTACATCGACTAAGACAA 119188 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 ||| | || || || |||| | | |||| | | || | || |||||||| Sbjct 119189 TATCCTCAA------CACCATCTTGATGAGATAAAATACCACCCTGCACAGTAGCACCAT 119242 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT--T 517674 | || || |||||||| ||||||| | || | | ||| || ||| | |||| || Sbjct 119243 ACGCTACTGCTTCATCTGGATTAATACCTTTAGAGACTTTCTTTCCA-TCAAAATATGCC 119301 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 | || |||||| ||| ||||| || || | |||||| || ||||| ||||| |||| Sbjct 119302 TCCAA-TAGTTGTTGTACTTTAGGGATTCGTGTTGATCCGCCGACTAAAACAATGTCAT 119359 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||||||||||||||| || || | ||||| || | || || | || | || | || Sbjct 119652 ATCAAAATCTTCACCACCTAAATGAGTATCACCCGCTGTTGCAATAACCTCAAAGACGCC 119711 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 ||| |||| |||| | | ||||||| || |||||||| | || | | | | Sbjct 119712 ATCCTCAATCGACAGTAACGATACATCAAATGTCCCACCACCTAAGTCGTAGACGATAA- 119770 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||||| || | | || ||||| | |||||| |||| || ||||||||||| || Sbjct 119771 --TCATTCGTTCACCATCTTTCTTATCCAAACCATAGGCAATTGCGGCAGCAGTTGGCTC 119828 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 ||| | ||||| ||| ||||| | || |||||| | |||||||| Sbjct 119829 ATTCACAATTCGCAATACATTCAATCCTGCAATTGTCCCTGCATC 119873 >seq151 Length=20182 Score = 122 bits (134), Expect = 7e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 |||||||||||||| | ||||||||||| ||||| | ||| |||| ||| |||||||| Sbjct 5950 GAATTTTTCTTCCATGCTATGGCAGGTCGAGAAGGATTAATTGATACTGCTGTTAAAACT 5891 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 ||||| || ||||||||||||||| ||||||||| || |||||| | | | || Sbjct 5890 GCTGAAACAGGTTATATTCAAAGACGTCTTGTTAAAGCTCTTGAAGATGTTATGGTAAAA 5831 Query 671780 TATGATGGTACAGTAAGAAA 671799 ||||||||||| || || || Sbjct 5830 TATGATGGTACTGTTAGGAA 5811 Score = 116 bits (128), Expect = 3e-20 Identities = 129/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 |||| |||||||||||| | | ||||||||||||||||| |||||||| ||| | ||| Sbjct 7398 TTAA-AGGTAAAGAAGGGAGATTAAGAGGAAATTTGATGGGTAAACGTGTTGATTTTTCT 7340 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 || || ||||| |||||| |||||| ||| | ||||| ||||| |||||||||| Sbjct 7339 GCTCGAACAGTGATTACTGGTGATCCGAATTTGTCTCTCGATGAACTTGGTGTTCCAAGA 7280 Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATT 669019 | ||||||| | |||||| | |||| |||||| | |||| ||| Sbjct 7279 AGTATTGCTCGTATTCTTACATACCCTGAAACTGTAACTCCATATAACATT 7229 >seq283 Length=8007 Score = 87.8 bits (96), Expect = 1e-11 Identities = 100/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 366991 ATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTT 367050 ||| |||| || || ||||| ||||| ||||| ||| |||| | |||||| | |||| Sbjct 4705 ATTATAGTTGCAACTATAGCTTTTGGAATGGGAATTGATAAGTCTGATGTTCGCTTTGTA 4764 Query 367051 ATTCATTATGGAGCTCCCAAGAATATT--GAAGGTTATTATCAAGAAATTGGTAGAGCAG 367108 ||||||| | || |||| ||| || ||||||||||||||||||| |||||||| | Sbjct 4765 ATTCATT-TATTTCTTCCAA-AATCTTTAGAAGGTTATTATCAAGAAACAGGTAGAGCTG 4822 Query 367109 GTCGTGATGGA 367119 | | |||||| Sbjct 4823 GAAGAGATGGA 4833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780804634860748