Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq195 156 5e-33 >seq195 Length=28285 Score = 156 bits (172), Expect = 5e-33 Identities = 456/698 (65%), Gaps = 11/698 (2%) Strand=Plus/Plus Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGG 110590 ||||||| || | |||||| ||||| ||||| || | || ||||| || | | Sbjct 13946 CCTCAAACTCTTCTCCGTAAACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGC 14005 Query 110591 ACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGA 110650 ||||| | | | || || | ||||| || | |||||| ||||| | | | | Sbjct 14006 TCCAATCTTGATTTGCTTCCACTCGTTTCATAAATAAGTCAGGTATCCATAAGCCATAAA 14065 Query 110651 AAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCA 110710 |||| || | ||| ||||| | ||| || || || || ||||| || || | Sbjct 14066 AAAGATCTCTTGCTCGAATTTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAA 14125 Query 110711 TGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGA-----CC 110765 ||||| | ||||||||||| | ||| | ||| | || || | |||| || Sbjct 14126 ATATATCTGCATGCCATGGTTCTATATAAATAGCAAAGGCGCC---AGGACGCTTGTTCC 14182 Query 110766 CGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824 | ||| ||| |||||| || || || ||||| |||||||||||||||||||| |||| Sbjct 14183 CACCTTGGTCAACATATCGAGCAGTATTGTTGAATACCCTGAGCATAGGAATAATACCAT 14242 Query 110825 CGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCA 110884 ||| |||||| || ||| ||| | | | |||||||| || | || | Sbjct 14243 TAGATGTACCATTAGTTCCCGCAATATAACTCCCAGTAGCACGAATACAATGAACATTGA 14302 Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATAC 110944 ||||| || || || |||||||| ||||| | | |||||| ||||||| | Sbjct 14303 GCCCAATTCCTCCTGCTGTTTTACTAATCATGGCACATGTTTTAAGTGTATCATAAATTC 14362 Query 110945 CATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCG 111004 | ||||| ||||| | || | | | ||| ||||| || || | |||||| || | Sbjct 14363 CTTCAATGGAATCATCTTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAG 14422 Query 111005 TTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG-GGACATCTTGTTG 111063 |||| ||||| || | |||||||| ||||| | | | | ||| ||||| || Sbjct 14423 TTCCTGCATTAAATAATGTAGGTGAAGCATGTGT-CATATATTTTGCAGACATAAGATTA 14481 Query 111064 TATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAAC 111123 ||||| || | || ||||| | ||| || ||||||| ||||| ||||| | | Sbjct 14482 TATGTTTCAATAGCTTTTTCAACATCATCACCATGGATACCAACTGCAACACGCATTATC 14541 Query 111124 ATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGG 111183 |||| ||| || |||| | |||||||| || ||| |||| ||||| ||||| Sbjct 14542 ATATGTTGGGGTCTTTCTGCAACCTTTCCATTAATACGAAGAAGATAACTTCGCTCTAAT 14601 Query 111184 GTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 || || | ||||| || | | ||||||||||| Sbjct 14602 GTTTTAAATCCAAAATAGTTATATGTAAAATCACGATC 14639 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT--TCCAAAATT 110343 ||||||| ||||||||||| |||| || ||| | | || || || | ||| Sbjct 13654 AGCAATACTTGCAAGATTGCAAACAGCTACTTCATCT--GGAGATGAATACTCGATTATT 13711 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAG-TTCTTCTGATTCGATTTGGAGTT 110402 || || || || || |||| || || | |||||| ||||||||||||||||| || Sbjct 13712 TCAGTGCATAAATTAGAACATTTGAT-AGTCCCAAGATTCTTCTGATTCGATTTACGATT 13770 Query 110403 GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462 ||||||||| ||||| ||||| | || |||| || || ||||||| | ||||| || Sbjct 13771 GCATGCATCTTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGC 13830 Query 110463 CTTCCATA 110470 | ||||| Sbjct 13831 ATACCATA 13838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973364332400