Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq195 89.7 6e-13 >seq195 Length=28285 Score = 89.7 bits (98), Expect = 6e-13 Identities = 236/358 (66%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 |||||||||||| | ||||| || | |||| |||| ||| | | || || || Sbjct 13486 ACCTTGAACACCAATGCCAATCGGGCGATGTCTTTTATTTGACCTCCTAGCTTCTTCCAC 13545 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 |||||| |||| ||||| | |||| |||| | | |||| ||||| | || Sbjct 13546 AGGATAATAATTAACATCAATAATCTTATTTAAATTTCTAGCTACAACTTTTGTAACATC 13605 Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 106467 ||| || |||| | ||||| || ||| ||| | | | | |||| | || || Sbjct 13606 ATGTAGCTTTTGAAAATCATAAATGC------CTTTGTCAATAAAAGTTGGTAAAGCAAT 13659 Query 106468 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 106527 ||| | |||||||||||| ||||| | || ||||| | ||||| || || Sbjct 13660 ACTTGCAAGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCAGTGCA 13719 Query 106528 CAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG-TTGCACGCAT 106586 || || |||| || || ||||| | |||||| || || | ||| | ||||| |||| Sbjct 13720 TAAATTAGAACATTTGATAGTCCCAAGATTCTTCTGATT-CGATTTACGATTGCATGCAT 13778 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 | || || ||||| | || | || ||||| ||||||| | |||||||| | ||| Sbjct 13779 CTTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTCCAGAATTGCATACCA 13836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978159835920