Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq346 123 3e-23 >seq346 Length=17871 Score = 123 bits (136), Expect = 3e-23 Identities = 234/342 (68%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 154713 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCA 154772 ||| ||||| | || ||| || || ||||| || ||||||||| ||||| ||||| Sbjct 4427 AATATATGTCTTATTCCAATATCTGCTCATGGTACAAATCCTGCTTCTGCTGCGATGGCT 4486 Query 154773 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTA 154832 || ||||||||| | | | || ||||| |||| || || | | | ||||| Sbjct 4487 GGAATGAAAGTTATCCCTATAAAATGTGACTCAAATGGAAATATTCAATTAGATGATCTT 4546 Query 154833 GAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATT-ATGATTACATACCCATC 154891 | | |||||||| | ||| | | | || | ||| || ||| ||||||| || Sbjct 4547 AAAATGAAAGCAAATTTACATAAAAATAATCTAGC-TGTTTTCATGGTTACATATCCTAG 4605 Query 154892 TACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGG 154951 |||||||||||| || || || | |||| | | || || || |||||||| ||| Sbjct 4606 TACACATGGTGTTTTCGAGCCTCATATTATAGAAGCATTAAAAATTGTTCATGATTTTGG 4665 Query 154952 TGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATG 155011 ||| || |||||| |||| |||||||| | |||||||| | ||| || || ||| Sbjct 4666 TGGACAAGTATATTTTGACGGAGCAAACATGAATGCACAAATCGGATTATGCAATCCAGC 4725 Query 155012 TGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAAC 155053 | |||||| ||| | |||||| |||| ||||| ||||| Sbjct 4726 AAAAATTGGTGCTGATATCTGTCATTTAAATTTACACAAAAC 4767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210208022720