Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq346 136 5e-27 >seq346 Length=17871 Score = 136 bits (150), Expect = 5e-27 Identities = 468/716 (65%), Gaps = 18/716 (3%) Strand=Plus/Plus Query 159022 TTACAACAAGAGGTATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTAT 159081 ||||||||| | || ||||| |||||||| || || || || | ||||||| || Sbjct 4061 TTACAACAAAAAGTCTTTAATTCATATCATACCGAAACAGAAATACTTCGATATATACAT 4120 Query 159082 GAGTTAGCATCAAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACT 159141 | | ||| ||||| | || |||||| || ||| | || ||||| || |||||| Sbjct 4121 CATCTCCAATCTAAAGACATATCTTTAGTATATTCCATGATACCTCTTGGAAGCTGTACT 4180 Query 159142 ATGAAACTAAACGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTG 159201 |||||||| || || | | ||| || || | | ||||| || || | | Sbjct 4181 ATGAAACTGAATGCGACCACTGAAATGTTGGGTATTACATGGCCTGAATTCAATTCTCTT 4240 Query 159202 CATCCACATACACCTA-TGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACA 159260 |||||| | ||| | |||| || ||| || ||||| | |||| | || ||| | Sbjct 4241 CATCCATTTGTACCAAGTGATCAAG-CCAAAGGCTATCATATGCTTATTAAAGAATTAGA 4299 Query 159261 GAAATGGTTATGTGAT--ATCACAGGGTTTGATTCTATAT-CATTACAACCTAACGCAGG 159317 ||||| || | | || || ||||| |||||| | || | |||| ||||| || | || Sbjct 4300 -AAATGATT-TATTATTAATTACAGGATTTGATGC-ATGTACATTTCAACCAAATTCTGG 4356 Query 159318 ATCACAGGGTGAGTATGCAGGACTG----TTAGCAATCCAAGCATACCATCAAGGATCAG 159373 | || || || ||| |||| || ||| ||| || ||| ||| ||| | Sbjct 4357 AGCAAGTGGAGAATATACAGGGCTTCAAATTAT--ATCTAA--ATATCATAAAGAAAATA 4412 Query 159374 GAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCAT 159433 | | | | | ||| ||||| | || ||| || || ||||| || |||||||| | Sbjct 4413 AACAAAGTCATCGTAATATATGTCTTATTCCAATATCTGCTCATGGTACAAATCCTGCTT 4472 Query 159434 CAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAG 159493 | || | |||||| || ||||||||| | | | || ||||| |||| || || Sbjct 4473 CTGCTGCGATGGCTGGAATGAAAGTTATCCCTATAAAATGTGACTCAAATGGAAATATTC 4532 Query 159494 ACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATT-ATG 159552 | | | ||||| | | |||||||| | ||| | | | || | ||| || ||| Sbjct 4533 AATTAGATGATCTTAAAATGAAAGCAAATTTACATAAAAATAATCTAGC-TGTTTTCATG 4591 Query 159553 ATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATT 159612 |||||||||| |||||||||||| || || | | || | | | || || ||| Sbjct 4592 GTTACATATCCTAGTACACATGGTGTTTTCGAGCCTCATATTATAGAAGCATTAAAAATT 4651 Query 159613 GTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGT 159672 |||||||| |||||| || |||||| |||| || ||||| | |||||||| | || Sbjct 4652 GTTCATGATTTTGGTGGACAAGTATATTTTGACGGAGCAAACATGAATGCACAAATCGGA 4711 Query 159673 CTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGAC 159728 || || ||| | |||||| ||| | |||||| |||| ||||| || || Sbjct 4712 TTATGCAATCCAGCAAAAATTGGTGCTGATATCTGTCATTTAAATTTACACAAAAC 4767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048568470880