Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq132 161 2e-34 seq220 136 9e-27 >seq132 Length=47203 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| |||||||||||||| || ||||| || ||||||||||| | ||| ||||| Sbjct 38624 GAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCT 38683 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || | |||||| || || ||||| || |||||||| || || ||||| ||||| Sbjct 38684 TCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTC 38743 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| |||||||| || ||||| || ||||| ||||| || ||||| || | || Sbjct 38744 TTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGT 38803 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTAC 195128 || ||| |||||||| | ||||| || Sbjct 38804 AATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq220 Length=17533 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || ||||| ||||| || || ||||| || |||||||| || | || || | || ||| Sbjct 2299 AATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCGTCT 2240 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || |||||||| || || || || | || |||||||| || |||||||| || |||||| Sbjct 2239 TCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCT 2180 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || || || || || || || ||||||||| || || | ||| Sbjct 2179 TGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATCGTT 2120 Query 195109 TTTCCTGTCAAAGTTTTTAC 195128 |||||||| | ||||||||| Sbjct 2119 TTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476510946586