Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq195 293 3e-74 >seq195 Length=28285 Score = 293 bits (324), Expect = 3e-74 Identities = 492/707 (70%), Gaps = 6/707 (1%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || || || |||| |||| ||||| ||| || ||||| | || Sbjct 13947 CTCAAACTCTTCTCCGTAAACATCGTCTAGACCAGGGGCTTCGTTCGGACAAAATAAGCT 14006 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 |||||| | || || |||| ||||||||| || |||||||| | ||| ||||| Sbjct 14007 CCAATCTTGATTTGCTTCCACTCGTTTCATAAATAAGTCAGGTATCCATA-AGCCATAAA 14065 Query 48245 TAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCA 48303 || ||| || | || | |||||| || || ||| | ||| || | || || | Sbjct 14066 AAAGATCTCTTGCTCGAATTTCTTCTTTACCGTGATTTTTACGAAGATCCAAGAATTCAA 14125 Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTC 48363 |||||| |||||||||||||||| ||| || || | | || || || || || || | Sbjct 14126 ATATATCTGCATGCCATGGTTCTATATAAATAGCAAAGGCGCCAGGACGCTTGTTCCCAC 14185 Query 48364 CTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTG 48423 |||| || | ||||| ||||||||||| | || || | ||| || | ||||||||| | Sbjct 14186 CTTGGTCAACATATCGAGCAGTATTGTTGAATACCCTGAGCATAGGAATAATACCATTAG 14245 Query 48424 ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA--ATTGAAAT 48481 || ||||||| ||||||| ||||||||| ||| |||| | ||| | | |||| | Sbjct 14246 ATGTACCATTAGTTCCCGCAATATAACTCCCAGTAGCACGAATACAATGAACATTG--AG 14303 Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 || || || ||||| ||||| || | ||||| |||||| |||||||||||||| Sbjct 14304 CCCAATTCCTCCTGCTGTTTTACTAATCATGGCACATGTTTTAAGTGTATCATAAATTCC 14363 Query 48542 TTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGT 48601 ||| || ||||||| ||||| ||| ||| || || || | ||| |||| ||| Sbjct 14364 TTCAATGGAATCATCTTTCATAGTTACTAGGAAGCAGGACGAAAGTTGAGGATTTGGAGT 14423 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATA 48661 ||||| |||||||||||| || || ||||| | | |||| | || | | ||||| Sbjct 14424 TCCTGCATTAAATAATGTAGGTGAAGCATGTGTCATATATTTTGCAGACATAAGATTATA 14483 Query 48662 TGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACAT 48721 |||||||||| | || | ||| ||| ||||| | | |||||||||| ||| Sbjct 14484 TGTTTCAATAGCTTTTTCAACATCATCACCATGGATACCAACTGCAACACGCATTATCAT 14543 Query 48722 ATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 || ||| |||||||| ||| || ||| || | |||||| | || ||||| Sbjct 14544 ATGTTGGGGTCTTTCTGCAACCTTTCCATTAATACGAAGAAGATAACTTCGCTCTAATGT 14603 Query 48782 TTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTG 48828 |||||| ||||||||||| |||| ||| || ||| | ||||||| Sbjct 14604 TTTAAATCCAAAATAGTTATATGTAAAATCACGATCGTAGATAATTG 14650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 || ||| ||| ||||| || |||||||| |||| |||| | ||| | ||||||||| Sbjct 13655 GCAATACTTGCAAGATTGCAAACAGCTACTTCATCTGGAGATGAATACTCGATTATTTCA 13714 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTAC 47997 | |||| |||| |||||||||||| || | ||| | ||||| ||| || | Sbjct 13715 GTGCATAAATTAGAACATTTGATAGTCCCAAGATTCTTCTGATTCGATTTACG--ATTGC 13772 Query 47998 ATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC 48046 |||| || || |||||||||||||| | || || ||| |||| | ||| Sbjct 13773 ATGCATCTTTATAAAGCATAAAAGGATTACCTGTCTCTGTCTGTGCTTC 13821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106284563120