Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq103 356 2e-92 seq325 149 5e-30 seq78 143 2e-28 seq189 118 9e-21 seq195 114 1e-19 seq151 114 1e-19 seq139 113 4e-19 seq132 111 1e-18 seq220 96.9 3e-14 seq333 86.0 5e-11 >seq103 Length=78968 Score = 356 bits (394), Expect = 2e-92 Identities = 607/875 (69%), Gaps = 4/875 (0%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||||||| | | || || ||||||| || | ||| || ||| || Sbjct 74795 GGAACTTTTGACGTATCGTTATTAACTATCGAAGAAGGAATTTTTGAAGTCAAAGCAACC 74736 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTT 551846 || ||| | ||| | || || ||||||||||| ||| | || ||| | || Sbjct 74735 GCAGGCGATACCCATTTGGGAGGAGAAGATTTTGACAATCGTCTTGTAAACCACTTCATT 74676 Query 551847 GAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGT 551906 | || |||||||| ||| |||| ||||| || ||| | |||||||||| Sbjct 74675 GCTGAATTTAAACGCAAACACAAGAAAGATCTTTCAGGGAATGCACGATCTCTTCGTCGG 74616 Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || |||| || || || | || ||||| |||||||||| || || || | ||| Sbjct 74615 CTTCGAACAGCATGTGAGCGTGCTAAACGGACTCTTTCATCATCAACACAGACGAGTATA 74556 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 ||| | ||||| |||||||| |||||||||| |||| ||||| | | || |||| Sbjct 74555 GAAATTGATTCCTTATTTGAAGGAATTGATTTATATACTTCTATTACTCGTGCTCGATTT 74496 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 ||||| ||||| ||||| ||||| |||||| |||||||| || ||||| | | Sbjct 74495 GAAGAACTTTGTCAAGATCTTTTTAGGGGAACAATGGAACCAGTTGAGAAAGTTCTTCGT 74436 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||||| || ||||||||||| | || ||||||||||| | |||||||| ||||| | Sbjct 74435 GATTCTAAAATTGATAAATCAAGTGTTCATGAAATTGTATTGGTTGGTGGTTCTACGCGT 74376 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206 ||||| |||| || || | || || ||| ||||| ||| | |||| || Sbjct 74375 ATTCCGCGTATTCAGAAATTGGTTTGTGATTTTTTTAATGGAAAAGAGCCAAATAGAACG 74316 Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266 | ||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| ||| Sbjct 74315 ATCAATCCAGATGAAGCTGTTGCCTATGGTGCGGCAGTTCAAGCTGCTATTCTTTCAGGA 74256 Query 552267 CAAACTGATGAA-AAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTG 552324 | || ||| ||||| ||| | || | |||| | ||||| | ||||| || | | Sbjct 74255 GACACATCGGAACAAACT-CAAGACATACT-CTTGCTTGATGTGGCGCCTCTCTCAATGG 74198 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 || | ||||| | || ||| | ||||| | ||||| | | ||||| ||| | || Sbjct 74197 GTATTGAAACTGCAGGCGGTGTGATGACAACACTTATTAAACGGAATACAACTGTCCCGA 74138 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 |||||| || || |||||||| ||| ||||||| || ||| ||| || ||| Sbjct 74137 CTAAAAAGTCCGAAGTCTTTTCTACTTATGCAGATAACCAGCCTGGTGTACTTATCCAAG 74078 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 | | |||||| ||| | | || |||||| | |||||| ||| ||||| Sbjct 74077 TATATGAAGGCGAACGTGCACGTACCAAAGATTGCCACTTACTTGGACAATTTGATTTAA 74018 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 ||| ||||| ||||| |||||||| || || ||||||||||||||||| || || |||| Sbjct 74017 CAGGCATTCCACCTGCACCTCGTGGTGTTCCTCAAATTGAAGTTACTTTTGACATTGATG 73958 Query 552565 CCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 | ||| |||| | ||||| ||||| ||| ||| Sbjct 73957 CTAATTCAATTCTTAATGTCTCTGCTGTTGAGAAA 73923 Score = 226 bits (250), Expect = 2e-53 Identities = 411/592 (69%), Gaps = 16/592 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| |||||||||||||| | | || || || || ||| | || | || || Sbjct 75380 GGTATTGATTTAGGAACCACGTTTTCATGCGTGGGAGTATGGATATCAGGACATGTAGAG 75321 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||| || ||||||||||| || |||| || ||||| ||||| | || || || | Sbjct 75320 ATTATAGCGAATGATCAAGGGAATCGAACCACACCATCATATGTAGCGTTTACAGATTCA 75261 Query 550118 GAAC-ATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACT 550174 ||| | ||| |||| |||||||||||| | || | || || ||||| |||||| Sbjct 75260 GAAAGACTTA-TTGGAGATGCAGCAAAAAACCAGGTTGCAATG--AATCCATGCAATACA 75204 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | |||||||| |||||| | |||||| | | || ||| | || || ||||| Sbjct 75203 GTATTTGATGCAAAACGTCTGATTGGACGGAAATTCGGGGATCCAGAAGTGCAATCAGAT 75144 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTT---AATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||| ||||||||||| || || | || | | | | || ||||||||| | | | Sbjct 75143 ATGAAACATTGGCCTTTTAAAGTTATAGACAAAGGT-CAG--AAGCCTTATATTCAGGTT 75087 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 || |||| | ||||| |||| | || || | |||||||| ||||| | | Sbjct 75086 GAATATAAAGGGGATATTAAAACATTTACGCCGGAGGAGATTTCATCAATGGTCCTTACA 75027 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 |||||||| || || || | | |||| ||||| | |||| || || || Sbjct 75026 AAAATGAAGGAAGTGGCAGAAGCGTATCTTGGGACTAAAGTTTCCAATGCTGTTATCACG 74967 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || ||||||||||| ||||| ||||| || || ||||| ||||| || ||| ||||| Sbjct 74966 GTCCCAGCATATTTCAATGATTCACAGCGACAGGCTACGAAAGACGCAGGATTGATTGCA 74907 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 ||| | |||||| | |||||||||||||||||||| || || || |||||||||| || Sbjct 74906 GGATTGAATGTTTTACGTATTATCAATGAACCTACAGCAGCAGCCATTGCATATGGTCTA 74847 Query 550532 GATAAACATAATGATCAA--GAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||| | | ||||| ||| ||||| || || |||||| |||||| Sbjct 74846 GATAAGAAGA--CATCAAATGAAAAGAATGTGCTTATTTTTGATCTTGGAGG 74797 >seq325 Length=14064 Score = 149 bits (164), Expect = 5e-30 Identities = 237/335 (71%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 429114 AATTCATAATCAATCCTTTAATATGATAACCGTCCACGTCTTGGTCAGCTAATATCATAA 429173 |||| |||||||| || ||||||||| || || ||||| |||| | ||||| | Sbjct 11928 AATTAATAATCAAACCCTTAATATGACTCCCATCATGATCTTGATCAGTCATAATCATCA 11987 Query 429174 TACTACCATACCTAAGTTCTTT--TAGATCATTATATACTTTCCCTTGTTCAAGACCAAT 429231 | ||||| | | ||| |||| | ||||||| || |||| ||| || || Sbjct 11988 AATGCCCATAGCGTAATTCAGAAGTAGA--AGTATATACCTTTTTATGTTGAAGGCCCAT 12045 Query 429232 GAtttttttGATAGCAGTTATTTCTTCATTTTCTGCTATTTT---CAACGGACTTTTTGT 429288 |||| || |||||| | ||||| |||||| ||||| ||| || || || Sbjct 12046 AATTTGCTTTATAGCATTAATTTCAGCATTTT-TGCTAATTTGTTCATGTGATGCTTC-- 12102 Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||| || |||||| |||| ||| | || ||| ||||||| ||||||| || Sbjct 12103 ACGAACATTTAACAATTTTCCTCTAAGCGGATAAACTCCAAAATAATCGCGACCAACCAC 12162 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 | | |||||||| || |||| ||| || ||||| ||||| || |||||||||||||| Sbjct 12163 ACCAATACCAGACATAGCTAAAGATTTTGCAGAATCACCTTCAGTTAAAATAAGTGTACA 12222 Query 429409 TTTATATCCTTCTTTGGTACCAGCTTTGTGAGCAT 429443 ||||| ||||| || || |||||||| | ||||| Sbjct 12223 TTTATGACCTTCCTTAGTTCCAGCTTTATTAGCAT 12257 >seq78 Length=127363 Score = 143 bits (158), Expect = 2e-28 Identities = 320/474 (68%), Gaps = 16/474 (3%) Strand=Plus/Minus Query 549989 GTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT----TGGCAAAA 550044 |||| || ||||| ||||| || || || ||| |||||||||||| || || | Sbjct 120474 GTAGTAATTGGTATTGATTTGGGGACGACTTATTCATGTGTTGGTGTTATGTTGTCAGGA 120415 Query 550045 TGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTC 550104 | |||||||||| | || || ||||| || || | | || || || |||||| | Sbjct 120414 CG----AGTTGAAATTTTGGCAAACGATCAGGGCAATCGTATAACGCCGTCATATGTTGC 120359 Query 550105 TTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164 || || || || | || ||||| ||||| || ||| | ||||| | ||||| Sbjct 120358 CTTTACTGATGAAGAGCGGTTGGTTGGGGATGCTGCGAAAAACCAAGCTCCGACAAATCC 120299 Query 550165 TACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTC-GACTG 550223 || ||| ||||||||| || || | ||||| || || ||| |||| ||| | Sbjct 120298 ACAAAACACTGTTTTTGATGTCAAGCGGCTGATTGGCAGGAGATTTGATGAGGAAGAC-G 120240 Query 550224 TTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATA 550283 ||||||| ||||||||||||||||| ||| | || || | ||| || || || Sbjct 120239 TTCAGGCGGATATGAAGCATTGGCCATTCAAGGTTTCGCATCGTGATGGGAAGCCGCATG 120180 Query 550284 TTGAAGCTACTCATGAAGGATCTGTTAA-ACAA--TTTTCACCAGAACAAATTTCATCTA 550340 |||||| || | || ||| | || | | ||| |||| ||| ||||||| ||| Sbjct 120179 TTGAAGTTAATATTGCTGGA---GAAAAGAGGATGTTTACACCGGAAGAAATTTCTGCTA 120123 Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATG 550400 |||| | ||||||||| ||| ||| || | | |||||| ||||| ||| Sbjct 120122 TGGTGCTTCGTAAAATGAAAGAAATAGCTGAAGCATATCTTGGTCGGACGGTTACCCATG 120063 Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAG 550454 | ||| | || ||||| || ||||| ||||| | ||||||||||| || |||| Sbjct 120062 CGGTAGTTACAGTACCCGCTTATTTCAATGATGCGCAACGTCAAGCAACCAAAG 120009 >seq189 Length=26291 Score = 118 bits (130), Expect = 9e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || ||||||||||||||| ||| || |||| | || || ||||| Sbjct 6180 GCAGTTATTACAGTACCAGCATATTTTTCTGATAGTCAGCGTCTTTCAACAAAGGATGCA 6239 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||| || | || ||||| |||||||||||||| |||||||| || ||| || Sbjct 6240 GGCACTATTGCCGGTTTAAACGTTCTCCGTATTATCAATGAGCCTACTGCGGCAGCAATT 6299 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574 |||||||| |||||| | | |||| ||||| ||||| || || ||||||| Sbjct 6300 GCATATGGTCTTGATTCAAAATCTGATAAAGAAAAAAATGTTCTTATTTTTGATT 6354 >seq195 Length=28285 Score = 114 bits (126), Expect = 1e-19 Identities = 345/523 (66%), Gaps = 15/523 (3%) Strand=Plus/Plus Query 685280 AttttttttAAGATCGAGGAAAAAATAAATATCTGCATGCCAAGGTTCAATATAAATAGC 685339 |||||| |||||| | ||| | | |||||||||||||| ||||| ||||||||||| Sbjct 14100 ATTTTTACGAAGATCCAAGAATTCAAATATATCTGCATGCCATGGTTCTATATAAATAGC 14159 Query 685340 AAATGAACCAG--CTCTT-TTGCCTCCTTGATTGGCATACCTCGATATATTATTAAATAC 685396 ||| | |||| | ||| || || ||||| | |||| | | |||| || ||||| Sbjct 14160 AAAGGCGCCAGGACGCTTGTTCCCACCTTGGTCAACATATCGAGCAGTATTGTTGAATAC 14219 Query 685397 AGTTA--ATACTCGTAG-ACCACTTGCTGTGCCTTGTGTAGAATTAATATAAGATCCATC 685453 | | ||| || |||| | | ||| || | || ||||||| ||| Sbjct 14220 CCTGAGCATAGGAATAATACCATTAGATGTACCATTAGTTCCCGCAATATAACTCCCAGT 14279 Query 685454 CGCCCTAATATTTGAAACATTTACACCAATTCCACCAGCATATTTACTAATCATAGCACA 685513 || | |||| |||||| | |||||||| || || |||||||||||| ||||| Sbjct 14280 AGCACGAATACAATGAACATTGAGCCCAATTCCTCCTGCTGTTTTACTAATCATGGCACA 14339 Query 685514 ATCTTTCCAACAATCACCAATTGCTCCCAT---ATCATCTTTTATTCCTAAAAGGAAACA 685570 ||| |||| |||| || | || ||||||||| || || ||||| || Sbjct 14340 TGTTTTAAGTGTATCATAAATTCCTTCAATGGAATCATCTTTCATAGTTACTAGGAAGCA 14399 Query 685571 GCTTGATAATTGTTCATGAGTAGTTCCAGCATTAAATAATGTTGGTGTTGCATGAGTAAA 685630 | || | ||| || | |||||| |||||||||||||| |||| ||||| || | Sbjct 14400 GGACGAAAGTTGAGGATTTGGAGTTCCTGCATTAAATAATGTAGGTGAAGCATGTGTCAT 14459 Query 685631 ATAACCCTGTGACAACATTTCATAAGTTTCAAATATTCTGTTTAGATCATTATTACGATA 685690 ||| |||| | | ||| ||||| |||| || ||| | ||| || || Sbjct 14460 ATATTTTGCAGACATAAGATTATATGTTTC-AATA-GCT-TTTTCAACATCATCAC---C 14513 Query 685691 ATGTATAGCAATTGCTACACGCATAAATAAATGTTGAGGTCTTTCTATGATTATTCCTTT 685750 ||| ||| ||| ||| |||||||| | | |||||| ||||||||| | |||| || Sbjct 14514 ATGGATACCAACTGCAACACGCATTATCATATGTTGGGGTCTTTCTGCAACCTTTCCATT 14573 Query 685751 AACtttttttAGATAACTTTGTTCAAGAGTTCTAAAACCAAAA 685793 || ||||||||| | || | ||| |||| |||||| Sbjct 14574 AATACGAAGAAGATAACTTCGCTCTAATGTTTTAAATCCAAAA 14616 >seq151 Length=20182 Score = 114 bits (126), Expect = 1e-19 Identities = 199/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 390856 TTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTT 390915 || || || ||||||||||| | ||| ||| ||||| | |||||| | |||| Sbjct 5811 TTCCTAACAGTACCATCATATTTTACCATAACATCTTCAAGAGCTTTAACAAGACGTCTT 5870 Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975 || |||||||| || || |||||||||| ||||||| ||| | ||||||| |||||| Sbjct 5871 TGAATATAACCTGTTTCAGCAGTTTTAACAGCAGTATCAATTAATCCTTCTCGACCTGCC 5930 Query 390976 ATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCAGAAATAAATGA---TCCAAAACAA 391032 ||| | |||||||||||||| ||| | | || || | |||| | ||| | Sbjct 5931 ATAGCATGGAAGAAAAATTCTTGAGGTGTTAAGCCTCTAAGATATGAGTTTTCAA---TA 5987 Query 391033 AATCCTCTTGCAGAAGGACTATCATCATGTTGTGCAAACATAGGTAATGTTCTATTATTA 391092 ||||| | || |||||||| ||||| || | || ||||| ||||||| ||| Sbjct 5988 AATCCGCCTGATTCAGGACTATAATCATCTTTAGTGAAATGCGGTAAAGTTCTATATTTA 6047 Query 391093 AATCTTTTTTGAATTCGTTTATCTTCGACAATAACTTGTCCAATACAT 391140 |||| | | || ||||| |||| || || |||||| | |||| Sbjct 6048 AATCCATAAGGGATACGTTTTCCTTCTACTATCTGTTGTCCTACACAT 6095 >seq139 Length=17171 Score = 113 bits (124), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 368583 TGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGA 368642 ||||||| |||||| ||| | | ||||||||| || || || | ||| ||||| Sbjct 1660 TGATTGGAATATTTCTCGAAACCGCTATTGGGGAACACCTATACCTCTTTGGGTCTCTGA 1601 Query 368643 TGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTGT 368702 |||| |||||||||||| || ||||||||||| ||| | ||||| | ||||| | Sbjct 1600 TGATTTTGAAGAAATTGTATGCGTAGGTTCAATTGCTGAACTTGAAGAACTTTCTGGAGA 1541 Query 368703 GCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAA 368762 | ||| | | |||| | ||| ||||| || ||||| |||| || || || | || Sbjct 1540 ACGCAATTTGACTGATATTCATCGGGATAAGATAGATCATATTACTATACCTTCTAGAAA 1481 Query 368763 AGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGG 368819 ||| |||||| || | || | |||| ||||| || || ||||||||||| || Sbjct 1480 AGGCAAAGGTGTACTTAGAAGAATCGAAGAGGTTTTCGACTGTTGGTTTGAATCTGG 1424 >seq132 Length=47203 Score = 111 bits (122), Expect = 1e-18 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| || | |||||| ||||| || |||||| ||||||||||||| || ||||| Sbjct 38624 GAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCT 38683 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | ||| || | || ||||| ||||| || || | ||| ||||| || ||||| ||||| Sbjct 38684 TCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTC 38743 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 |||||||||||| || ||| || |||||||| || | || | || || | || Sbjct 38744 TTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTG-ACGACTCCACCTCCAAAG 38802 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAAC 563462 ||| ||||| || ||||| ||||| || Sbjct 38803 TAATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq220 Length=17533 Score = 96.9 bits (106), Expect = 3e-14 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || | ||||||||||||||| |||||| |||||||| |||| ||| || | Sbjct 2305 AGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGG 2246 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| || || || ||||||||||| | | || || || || ||||| || || Sbjct 2245 CCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCC 2186 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || ||||||||||| ||| || || |||||||| | ||| | || ||| || || Sbjct 2185 TTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTG-ATGATTCCACTTCTAGTGT 2127 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAAC 563462 | ||||| || || |||||||| || Sbjct 2126 TATCGTTTTTCCTGTTAGAGTTTTTAC 2100 >seq333 Length=24216 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 723236 CTTATAAAATTATTATATTAGATGAAGCAGATTCTATGACTGATGAAGCTCAAGATGCAC 723295 |||||||||||||||| ||||| || ||||||||||||||| | || || ||| || Sbjct 9038 CTTATAAAATTATTATTTTAGACGAGGCAGATTCTATGACTCAGGATGCACAATCGGCTT 8979 Query 723296 TTCGTGTTATTATTGAACAATATAGTACAACTACGCGATTTTGTTTTATCTGTAATTATA 723355 | || || || ||| |||| || || ||| |||||||| | || |||||||||| Sbjct 8978 TACGACGTACAATGGAAACATATTCTAAAATTACAAGATTTTGTCTAATTTGTAATTATA 8919 Query 723356 TT 723357 || Sbjct 8918 TT 8917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029277067345420