Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq220 145 6e-30 seq132 132 4e-26 >seq220 Length=17533 Score = 145 bits (160), Expect = 6e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || | ||||||||| |||||||| || |||||||| || | | || | | | Sbjct 2302 CGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGTCCGGCCG 2243 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| ||||| || ||||| || ||||||||||| || || |||||||| || || Sbjct 2242 TCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTG 2183 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||| ||| | || | || || || | ||||||||| || || | | Sbjct 2182 TCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACTTCTAGTGTTATC 2123 Query 101435 GTTTTGCCGGTTAAAGTTTTTAC 101457 ||||| || |||| ||||||||| Sbjct 2122 GTTTTTCCTGTTAGAGTTTTTAC 2100 >seq132 Length=47203 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || |||||||| || ||||||||||| | | ||||| |||| ||||| ||| Sbjct 38640 TGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCTTCCATCCTCCAACTGC 38699 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | || |||||||| || ||||| ||||||||||||||||| || Sbjct 38700 TTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTCTTTATCTTGAATCTTG 38759 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||||| |||| ||||| || | ||| | |||||| || || Sbjct 38760 CTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGTAATCGTTTTTCCTGTA 38819 Query 101447 AAAGTTTTTAC 101457 | ||||| || Sbjct 38820 AGTGTTTTCAC 38830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276670987806