Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq132 114 1e-20 seq220 113 3e-20 >seq132 Length=47203 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||||||| || | || || || ||||| || |||||||||||||| || ||| Sbjct 38625 AGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGTTCTT 38684 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || || || |||||||||| |||| || || Sbjct 38685 CCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCCTTCT 38744 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| ||| | | | ||||||| ||||||||||| ||| Sbjct 38745 TTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTCTGACGACTCCACCTCCAAAGTA 38804 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTAC 48754 ||||||||||| || | ||||| || Sbjct 38805 ATCGTTTTTCCTGTAAGTGTTTTCAC 38830 >seq220 Length=17533 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || || || | ||| || || ||||| || |||||||| |||||| Sbjct 2314 CCGCCACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGAT 2255 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| |||||||| || | |||||||| |||| ||| Sbjct 2254 AGCGTCCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGA 2195 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||| || ||| ||| | | | ||||| | ||||| Sbjct 2194 ATGCCCTCCTTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCACT 2135 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 || | || ||||||||||| || | ||||||||| Sbjct 2134 TCTAGTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935937921634