Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq103 356 2e-92 seq78 147 1e-29 seq189 131 1e-24 seq151 123 2e-22 seq325 118 7e-21 seq333 107 1e-17 seq132 107 1e-17 seq220 104 2e-16 seq283 95.1 8e-14 seq337 91.5 1e-12 seq139 91.5 1e-12 seq75 86.0 4e-11 >seq103 Length=78968 Score = 356 bits (394), Expect = 2e-92 Identities = 611/879 (70%), Gaps = 12/879 (1%) Strand=Plus/Minus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 |||||| ||||||| | ||| || | ||||||| || |||| || | |||||| Sbjct 74795 GGAACTTTTGACGTATCGTTATTAACTATCGAAGAAGGAATTTTTGAAGTCAAAGCAACC 74736 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGTGTT 475429 || || ||| | ||| | || || ||||||||||| ||| | |||||| | || Sbjct 74735 GCAGGCGATACCCATTTGGGAGGAGAAGATTTTGACAATCGTCTTGTAAACCACTTCATT 74676 Query 475430 GAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAAGACGT 475489 | || || || | ||| | || ||||||||| ||| | | | | || Sbjct 74675 GCTGAATTTAAACGCAAACACAAGAAAGATCTTTCAGGGAATGCACGATCTCTTCGTCGG 74616 Query 475490 CTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTT 475549 ||| |||| || ||||| |||||||| || ||||||| || | || || || | | | Sbjct 74615 CTTCGAACAGCATGTGAGCGTGCTAAACGGACTCTTTCATCATCAACACAGACGAGTATA 74556 Query 475550 GAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTT 475609 ||| ||||||| | |||||||||||||||| ||||| |||||| | ||| |||| Sbjct 74555 GAAATTGATTCCTTATTTGAAGGAATTGATTTATATACTTCTATTACTCGTGCTCGATTT 74496 Query 475610 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGA 475669 ||||| ||||| ||||| ||||| |||||| ||||| ||||| ||||||| | Sbjct 74495 GAAGAACTTTGTCAAGATCTTTTTAGGGGAACAATGGAACCAGTTGAGAAAGTTCTTCGT 74436 Query 475670 GATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGA 475729 ||||||||| |||| |||||| || ||||||||||| | || || ||||| || | Sbjct 74435 GATTCTAAAATTGATAAATCAAGTGTTCATGAAATTGTATTGGTTGGTGGTTCTACGCGT 74376 Query 475730 ATTCC-AAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAG 475788 ||||| | | ||| || || ||| | ||||||||| ||| || |||| || Sbjct 74375 ATTCCGCGTATTCAGA-AATTGGTTTGTGATTTTTTTAATGGAAAAGAGCCAAATAGAAC 74317 Query 475789 TGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG 475848 | ||||| |||||||||||||| ||||| || || || ||||| |||||| | ||||| Sbjct 74316 GATCAATCCAGATGAAGCTGTTGCCTATGGTGCGGCAGTTCAAGCTGCTATTCTTTCAGG 74257 Query 475849 TCA---ATCAGACGAGAAACTAAATA-ATATTGTACTTG-TTGACGTAACTCCACTTTCA 475903 | ||| || | ||||| || | ||| | |||| |||| || | || || ||| Sbjct 74256 AGACACATCGGA--ACAAACTCAAGACATACT---CTTGCTTGATGTGGCGCCTCTCTCA 74202 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 | ||| ||||||| | || || | ||||| | |||||| | | ||||| || || Sbjct 74201 ATGGGTATTGAAACTGCAGGCGGTGTGATGACAACACTTATTAAACGGAATACAACTGTC 74142 Query 475964 CCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATC 476023 || ||||| || |||| ||||| |||||| | ||||| || | |||| ||| Sbjct 74141 CCGACTAAAAAGTCCGAAGTCTTTTCTACTTATGCAGATAACCAGCCTGGTGTACTTATC 74082 Query 476024 CAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAAT 476083 ||| | | |||||| ||| | | || |||||| || ||||||| ||| || Sbjct 74081 CAAGTATATGAAGGCGAACGTGCACGTACCAAAGATTGCCACTTACTTGGACAATTTGAT 74022 Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 | ||| ||||| ||||| || | || |||||||||||||||||||||||||| ||| Sbjct 74021 TTAACAGGCATTCCACCTGCACCTCGTGGTGTTCCTCAAATTGAAGTTACTTTTGACATT 73962 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAA 476182 ||||| ||| ||||||||||| ||||| ||| ||| Sbjct 73961 GATGCTAATTCAATTCTTAATGTCTCTGCTGTTGAGAAA 73923 Score = 279 bits (308), Expect = 3e-69 Identities = 424/597 (71%), Gaps = 10/597 (2%) Strand=Plus/Minus Query 474327 TTGCAATTGGTATTGATTTAGGAACTAC--TTACAGTTGTGTAGCTGTTTGGCAAAATGG 474384 ||||| ||||||||||||||||||| || || || || || | || ||| | || Sbjct 75388 TTGCAGTTGGTATTGATTTAGGAACCACGTTTTCA--TGCGTGGGAGTATGGATATCAGG 75331 Query 474385 TAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTT 474444 | ||||| || || || ||||| ||||| ||| |||| |||||||||||||| | || Sbjct 75330 ACATGTAGAGATTATAGCGAATGATCAAGGGAATCGAACCACACCATCATATGTAGCGTT 75271 Query 474445 TACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGT 474504 ||| || | ||| |||||||||||||| || ||| | || | |||| ||||| Sbjct 75270 TACAGATTCAGAAAGACTTATTGGAGATGCAGCAAAAAACCAGGTTGCAATGAATCCATG 75211 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 ||||| | |||||||| ||| | ||||||| || || || | ||| | || || Sbjct 75210 CAATACAGTATTTGATGCAAAACGTCTGATTGGACGGAAATTCGGGGATCCAGAAGTGCA 75151 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA 474624 ||| |||||| |||||||||||||| || ||| | ||| || || ||||| | Sbjct 75150 ATCAGATATGAAACATTGGCCTTTTAAAGTTATAGACAAAGGTCAGAAGCCTTATATTCA 75091 Query 474625 AGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | |||| | ||| || | |||| |||| | ||||| | ||||| |||||||| Sbjct 75090 GGTTGAATATAA--AGGGGATATTAAAACATTTACGCCGGAGGAGATTTCATCAATGGTC 75033 Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG-ACAAGAAGTAACTGATGCAGT 474741 | | |||||||| || || | |||||||| || | |||| | |||| || Sbjct 75032 CTTACAAAAATGAAGGAAGTGGCAGAAGCGTATCTTGGGACTA-AAGTTTCCAATGCTGT 74974 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||||||||| |||||||| || || || || || ||||| || ||| Sbjct 74973 TATCACGGTCCCAGCATATTTCAATGATTCACAGCGACAGGCTACGAAAGACGCAGGATT 74914 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 |||||||| | ||||||||||||||||| |||||||| |||||||| || |||| || Sbjct 74913 GATTGCAGGATTGAATGTTTTACGTATTATCAATGAACCTACAGCAGCAGCCATTGCATA 74854 Query 474862 TGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 |||||| |||||||| | || ||| ||||| | || |||||| |||||| Sbjct 74853 TGGTCTAGATAAGAAGACATCAAATGAAAAGAATGTGCTTATTTTTGATCTTGGAGG 74797 >seq78 Length=127363 Score = 147 bits (162), Expect = 1e-29 Identities = 319/470 (68%), Gaps = 18/470 (4%) Strand=Plus/Minus Query 474331 AATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTT----TGGCAAAATGGTA 474386 ||||||||||||||| || || ||||| ||||| | |||| || || | | Sbjct 120469 AATTGGTATTGATTTGGGGACGACTTATTCATGTGTTGGTGTTATGTTGTCAGGACG--- 120413 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446 ||| ||||| | || || || || || ||| | | ||| || ||||||||| | |||| Sbjct 120412 -AGTTGAAATTTTGGCAAACGATCAGGGCAATCGTATAACGCCGTCATATGTTGCCTTTA 120354 Query 474447 CTGAAACTGAACATC---TTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| |||| | | | |||| |||||||| ||| | |||||| | | ||||| Sbjct 120353 CTGA---TGAAGAGCGGTTGGTTGGGGATGCTGCGAAAAACCAAGCTCCGACAAATCCAC 120297 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGAT-ACCACTGTC 474562 || ||| ||||||||| || | ||||||| | | |||||||| | || || Sbjct 120296 AAAACACTGTTTTTGATGTCAAGCGGCTGATTGGCAGGAGATTTGATGAGGAAGAC-GTT 120238 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 || | |||||| |||||||| || ||||| || || ||| || || || | Sbjct 120237 CAGGCGGATATGAAGCATTGGCCATTCAAGGTTTCGCATCGTGATGGGAAGCCGCATGTT 120178 Query 474623 GAAGC-AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 |||| |||| || || |||| | ||| |||||||| |||||||| | ||||| Sbjct 120177 GAAGTTAATATT-GCTGGAGAAAAGAGGATGTTTACACCGGAAGAAATTTCTGCTATGGT 120119 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | ||||||||| ||| || |||||||||| | || || |||| || Sbjct 120118 GCTTCGTAAAATGAAAGAAATAGCTGAAGCATATCTTGGTCGGACGGTTACCCATGCGGT 120059 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 | |||| || || || ||||| |||||| | |||||||||||||| |||| Sbjct 120058 AGTTACAGTACCCGCTTATTTCAATGATGCGCAACGTCAAGCAACCAAAG 120009 Score = 140 bits (154), Expect = 2e-27 Identities = 347/527 (66%), Gaps = 6/527 (1%) Strand=Plus/Minus Query 475628 CTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAA 475687 || |||| ||||||||| | || || || |||||||| | ||| || || | ||| Sbjct 119429 CTTTTTAAAAAAACAATGAAGCCGGTAGAGCAAGTTCTTAAGGATGGAAATGTTAAGAAA 119370 Query 475688 TCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAA 475747 || | | |||| |||||| | || || || |||||| |||| || ||| || | || Sbjct 119369 TCTGACATTGATGACATTGTTTTAGTCGGCGGATCAACACGAATCCCTAAAGTACAACAA 119310 Query 475748 ATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCT 475807 | | |||||||| |||| || || | | || || | ||||| |||||||| Sbjct 119309 CTATTGGAGGCATATTTTGATGGAAAGAAAGTCTCTAAAGGTATTAATCCAGATGAAGCA 119250 Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTA 475867 || || ||||| ||| |||| || | | ||||||||| |||| | | | Sbjct 119249 GTAGCGTATGGTGCTACTGTGCAGGGTGGTATTTTATCTCATCAAGATGGTG------TT 119196 Query 475868 AATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGG 475927 | ||||||| | || || |||| |||| | | ||||| |||| ||| ||| || Sbjct 119195 GAGGATATTGTCTTAGTCGATGTAAATCCATTGACTTTAGGAATTGAGACAACTGGTGGC 119136 Query 475928 ATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTT 475987 | |||||||| || ||| | ||||| || || |||||| | | ||| Sbjct 119135 GTAATGACTAAACTAATTTCACGCAATACAGTAATTCCGACACGTAAATCACAGATCTTT 119076 Query 475988 TCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAA 476047 |||||| |||||||||||| || || || ||| | ||||| || || | Sbjct 119075 TCCACTGCATCTGATAATCAAGATACCGTTTTGATTCAAGTGTTTGAGGGCGAGCGCTCT 119016 Query 476048 TTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCC 476107 | || ||||||||||||| | || | ||| | | ||| || ||||| ||||| Sbjct 119015 CTTACAAAAGATAATAACATGTTGGGCAAATTTGAGTTAACAGGAATACCTCCAGCTCCA 118956 Query 476108 AGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 | || || ||||| |||||||| || ||||| ||||||| ||||| Sbjct 118955 CGTGGTGTGCCTCAGATTGAAGTGACGTTTGAGCTTGATGCCAATGG 118909 >seq189 Length=26291 Score = 131 bits (144), Expect = 1e-24 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||| || |||||||||||| |||| ||| |||| |||| || ||||| Sbjct 6180 GCAGTTATTACAGTACCAGCATATTTTTCTGATAGTCAGCGTCTTTCAACAAAGGATGCA 6239 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| ||| | || ||| | |||||||| ||||| || || || || ||| || Sbjct 6240 GGCACTATTGCCGGTTTAAACGTTCTCCGTATTATCAATGAGCCTACTGCGGCAGCAATT 6299 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT 474911 || |||||||||||| || ||||| |||||| ||||||| | || ||||||| Sbjct 6300 GCATATGGTCTTGATTCAAAATCTGATAAAGAAAAAAATGTTCTTATTTTTGATT 6354 Score = 120 bits (132), Expect = 2e-21 Identities = 242/359 (67%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 475478 GCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACT 475537 || ||| | ||| | |||||||| || |||||||||||| || | | || || ||| Sbjct 6626 GCTTTACGGCGTTTAAGAACTGCATGCGAACGTGCTAAGAGAACATTATCCAGTGTTACA 6685 Query 475538 CAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACA 475597 |||||||| |||||| |||| || | || || ||| || || | ||||| Sbjct 6686 CAAACTACAGTTGAAATTGAGTCATTAAAAGATGGTCAAGATCTTAGTATTAATATTAAT 6745 Query 475598 AGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAA 475657 | || |||||||| ||| ||| | ||||| | ||| |||| || |||||| Sbjct 6746 CGTGCACGTTTTGAAGAGATTAATTCAAAAGTCTTTCAATCAACTCTTGAGCCTGTTGAA 6805 Query 475658 CAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717 ||||||| | |||||| ||| | || ||||| || | |||| |||||| | || || Sbjct 6806 AAAGTTCTTAAAGATTCAAAAATAGATAAATCTAAAATTGATGATATTGTTTTGGTTGGT 6865 Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAG 475777 || ||||| | |||||| || | || | |||| | |||| | || ||| Sbjct 6866 GGATCAACTCGTATTCCACGTATTCAAAAACTCGTTTCTGATTTTTTTGACGGAAAATCT 6925 Query 475778 TTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC 475836 | ||| || | |||||||| ||| |||||||||||| || || || |||||||| Sbjct 6926 CTTAATAAATCCATCAATCCTGACGAATGTGTTGCATATGGTGCAGCAGTTCAAGCAGC 6984 Score = 95.1 bits (104), Expect = 8e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||||||||| ||||| ||||| |||||||| ||||| |||||||| | ||| | Sbjct 5663 GTAGAAATAATTGCAAATGATCAAGGAAATAGAACGACACCTTCATATGTAGCCTTTGTT 5722 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 | || ||||| ||||| ||||| | ||||| ||||||| ||| Sbjct 5723 GGAAATGAACGCCTTATAGGAGACTCAGCTAAGAATCAAGCAGCA 5767 Score = 91.5 bits (100), Expect = 1e-12 Identities = 176/258 (68%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 290743 TAATGAAATATCTAATGTTCCTGCACCAAAATCGTATATAATAACATTACCTCCATTTTT 290802 |||||| | ||| ||||| || | || ||||| | |||| |||||| ||||| Sbjct 6383 TAATGATACATCAAATGTACCGCCCCCCAAATCAAAAATAAGAACATT-------TTTTT 6331 Query 290803 ATTTGTCCAAGTTTTGCTTCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTAT 290862 ||| || | ||||| || ||||||||||| | || || || || || ||||| || Sbjct 6330 CTTTATCAGA-TTTTGAATC-AAGACCATATGCAATTGCTGCCGCAGTAGGCTCATTGAT 6273 Query 290863 AATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGC 290922 ||| | | || | | ||| ||||| | | | ||| |||| | || || Sbjct 6272 AATACGGAGAACGTTTAAACCGGCAATAGTGCCTGCATCCTTTGTTGAAAGACGCTGACT 6213 Query 290923 ATCATTAAAATAAGCAGGGACTGTAATAACAGCTTTTTCCACTTTCTTTTTCAAATAATT 290982 |||| |||||| || || ||||||||||| |||||||| ||||| || || | | | | Sbjct 6212 ATCAGAAAAATATGCTGGTACTGTAATAACTGCTTTTTCAACTTTTTTATTTAGTTTAGT 6153 Query 290983 TTCTGCCATTTGTTTTAT 291000 |||||| |||| ||| || Sbjct 6152 TTCTGCTATTTCTTTCAT 6135 >seq151 Length=20182 Score = 123 bits (136), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 318688 TTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTT 318747 || || |||||||||||||||| || ||| |||||| || |||||| | |||| Sbjct 5811 TTCCTAACAGTACCATCATATTTTACCATAACATCTTCAAGAGCTTTAACAAGACGTCTT 5870 Query 318748 TGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCC 318807 || | ||||||||| || |||||||||| |||||||| ||| | ||||||| |||||| Sbjct 5871 TGAATATAACCTGTTTCAGCAGTTTTAACAGCAGTATCAATTAATCCTTCTCGACCTGCC 5930 Query 318808 ATAACTTGGAAAAAGAATTCAGCAGGTCCTAAACCTTTAATAAATGAACTTGGACAAAAA 318867 ||| | ||||| || ||||| |||| ||| ||| ||| | |||| || | ||| Sbjct 5931 ATAGCATGGAAGAAAAATTCTTGAGGTGTTAAGCCTCTAAGATATGAGTTTTCAATAAAT 5990 Query 318868 CCTCTAGCTAAAGCACTGTCATCATGTTGTGCAAACATTGGAAGAGTTCTATTATTAAAT 318927 || | | | || ||| | ||||| || | || || | |||||||| |||||| Sbjct 5991 CCGCCTGATTCAGGACTATAATCATCTTTAGTGAAATGCGGTAAAGTTCTATATTTAAAT 6050 Query 318928 C 318928 | Sbjct 6051 C 6051 Score = 98.7 bits (108), Expect = 6e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 321717 CCATTTTTTACTAATTGTGTGAGATATTCAATATTATGTTCCGTAACAATTTCATCAAAT 321776 |||||| ||| |||| | ||| | | ||| |||| | || ||| ||||| || Sbjct 7200 CCATTTCGTACCAATTCTTGGAGTTTATGAATGTTATATGGAGTTACAGTTTCAGGGTAT 7259 Query 321777 GTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTCAGTGCAATATTTGGATCA 321836 |||||| | |||||| || ||| | ||||| ||||| || | | ||| |||||| Sbjct 7260 GTAAGAATACGAGCAATACTTCTTGGAACACCAAGTTCATCGAGAGACAAATTCGGATCA 7319 Query 321837 GATGTGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATA 321896 || || ||||| ||| |||| | |||||||||||||||||| | ||||||||| | Sbjct 7320 CCAGTAATCACTGTTCGAGCAGAAAAATCAACACGTTTACCCATCAAATTTCCTCTTAAT 7379 Query 321897 CGACCTTCTTTTCC 321910 | |||||||| || Sbjct 7380 CTCCCTTCTTTACC 7393 >seq325 Length=14064 Score = 118 bits (130), Expect = 7e-21 Identities = 229/335 (68%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 356261 AATTCATTATTAATCCTTTAATATGATATCCATCAACGTCTTGATCTGCTAAAATCATAA 356320 |||| || || || || ||||||||| |||||| |||||||| | | |||||| | Sbjct 11928 AATTAATAATCAAACCCTTAATATGACTCCCATCATGATCTTGATCAGTCATAATCATCA 11987 Query 356321 TACTACCATACCTAAGTTCTTTAAGATCATTATATACTTTTCCTTGCTCTAAACCAACAA 356380 | ||||| | | ||| | | | ||||||| ||| || | | || | || Sbjct 11988 AATGCCCATAGCGTAATTCAGAAGTAGAAGTATATACCTTTTTATGTTGAAGGCCCATAA 12047 Query 356381 ttttttttATAGCAGTTATTTCTTCATTACTTGCGACAATTGCTGGACTTTTGGTTCTT- 356439 ||| ||||||||| | ||||| |||| |||| | ||| || | | || | ||| Sbjct 12048 TTTGCTTTATAGCATTAATTTCAGCATTT-TTGCTA--ATT--TGTTCATGTGATGCTTC 12102 Query 356440 ----ACATTTAGTGGTTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGACAAC 356495 ||||||| ||||||| | | || ||| ||| ||||||| | || || || Sbjct 12103 ACGAACATTTAACAATTTTCCTCTAAGCGGATAAACTCCAAAATAATCGCGACCAACCAC 12162 Query 356496 ATTTAATCCAGACATAGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGTACA 356555 | | ||||||||||| || | ||| || ||||| |||||||| | ||| | ||||| Sbjct 12163 ACCAATACCAGACATAGCTAAAGATTTTGCAGAATCACCTTCAGTTAAAATAAGTGTACA 12222 Query 356556 TTTATATCCTTCTTTTGTTCCAGCTTTATGAGCAT 356590 ||||| ||||| || ||||||||||||| ||||| Sbjct 12223 TTTATGACCTTCCTTAGTTCCAGCTTTATTAGCAT 12257 Score = 89.7 bits (98), Expect = 3e-12 Identities = 203/301 (67%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 355402 GTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTACCAAATTGA 355461 || || ||||| |||| | |||| |||||| || || || | ||||||||||| Sbjct 11204 GTAAAAATATAACGTGGAGATGCAGCATCTTTCCCACCTTGCAAACGAGTACCAAATTGC 11263 Query 355462 CCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCCATTTTTATT 355521 |||||||| | | ||| || || |||||||||||| | ||||||| | | |||| Sbjct 11264 CCATTGGGTTTCATGAGATTAATATTATTACTTCCAACAAATGTTTGTGCTAATCCTATT 11323 Query 355522 ATAGTTTCAGTCATTGAC--TGTTCTCCATGATGATATTTAGTTCTTTTCGAAACTGCAC 355579 || |||| || | ||| || ||||||||||||||| ||| | |||| | Sbjct 11324 ATCGTTTGTGTAA--GACTTTGCTCTCCATGATGATATGCAGTATGCTCAGAAATATATC 11381 Query 355580 CTTGTAATTCAGATACTTTAATTTCTTCTTTATAAATACCTTCTTCCTCTGAACCATACA 355639 || ||||| | ||||||||||| |||| ||| | ||| | | | ||| | | Sbjct 11382 CTGATAATTGTGCAACTTTAATTTC-ACTTTTTAATTTTCTTTTAAAAC--ACCCAAATA 11438 Query 355640 ATACTTTTCTTTGAGATGGTTTAAGACCGTCAGCTATGTTAGGTATTGATCTCATATTAT 355699 |||||||| || ||||| | ||| || ||| ||| || ||||| ||||||| Sbjct 11439 TAACTTTTCTCTGTCCAGGTTTTAAACCATCCACTACAGAAGGAATCGATCTAATATTAT 11498 Query 355700 C 355700 | Sbjct 11499 C 11499 >seq333 Length=24216 Score = 107 bits (118), Expect = 1e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 630142 TCCATCTTATAAAATAATTATTCTAGACGAAGCTGATTCTATGACTGATGAAGCACAAGA 630201 |||| |||||||||| |||||| ||||||| || |||||||||||| | || |||||| Sbjct 9043 TCCACCTTATAAAATTATTATTTTAGACGAGGCAGATTCTATGACTCAGGATGCACAATC 8984 Query 630202 TGCTTTACGAGTTATTATCGAACAGTATAGCACAACAACAAGATTTTGTTTTATTTGTAA 630261 ||||||||| || || ||| ||| | || |||||||||||| | |||||||| Sbjct 8983 GGCTTTACGACGTACAATGGAAACATATTCTAAAATTACAAGATTTTGTCTAATTTGTAA 8924 Query 630262 TTATATAAC 630270 |||||| || Sbjct 8923 TTATATTAC 8915 >seq132 Length=47203 Score = 107 bits (118), Expect = 1e-17 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || | |||||| ||||| || |||||| | ||| ||||||| || || Sbjct 38621 ACGGAGCCGCAATACAAGGTGAAGAGTCGATTCTTTCTGGATATTGTAATCAGAAAGTGT 38680 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||| || | |||||||||||||| || || ||||||||||| || ||||| || Sbjct 38681 TCTTCCATCCTCCAACTGCTTTCCAGCAAAGATTAGCCGTTGTTGATCCGGTGGAATCCC 38740 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || ||||||||||| ||||||| ||||| || || Sbjct 38741 TTCTTTATCTTGAATCTTGCTTTTGACATTGTCAATTGTGTC 38782 >seq220 Length=17533 Score = 104 bits (114), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || | |||||||||||| || |||||| | ||| || |||| ||| || Sbjct 2309 ACGAAGGCGTAATACAAGATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGATAGCGT 2250 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| || ||||| || |||||||| | ||| ||||| || || ||||| || Sbjct 2249 CCGGCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAAACGCTGTTGGTCCGGTGGAATGCC 2190 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||| || ||| ||| || || ||||| | || | | ||| | Sbjct 2189 CTCCTTGTCTTGAATTTTGCTTTTAACATTGTCGATTGTATCTGATGATTCCA-CTTCTA 2131 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 | || || ||||| || || ||||| || || Sbjct 2130 GTGTTATCGTTTTTCCTGTTAGAGTTTTTAC 2100 >seq283 Length=8007 Score = 95.1 bits (104), Expect = 8e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 627729 ATCTCTAAAATTATAAAATGCATAACAATAAGATTTATCACCATCACGTCCTGCTCTACC 627788 |||| || | |||||||| |||| | || ||| ||||| | ||| |||||||| Sbjct 4872 ATCTTTATAGTTATAAAACAGCCAACATTCAGCAATATTTCCATCTCTTCCAGCTCTACC 4813 Query 627789 TATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCAT-AATGTATTACTGCTCTCA 627847 | ||||||||||||||||||| | | ||| || | || |||| ||||| | | Sbjct 4812 TGTTTCTTGATAATAACCTTCTAAAGATTTTGG-AAGAAATAAATGAATTACAAAGCGAA 4754 Query 627848 CATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCAACCATTATAT 627898 |||| || |||| ||| ||||||||||| || || |||||||| || |||| Sbjct 4753 CATCAGACTTATCAATTCCCATTCCAAAAGCTATAGTTGCAACTATAATAT 4703 >seq337 Length=9296 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 867422 TAAGTTTTCTGGCTAAATCAAATTTATTTAAATCACTTTTGGCTTTTAAATCAGATTG-T 867480 ||||||||| ||| ||| |||| || || ||||||| |||||| | || | | Sbjct 1524 TAAGTTTTCGTGCTTTTTCATATTTTTTAAAGTCACTTTGACCTTTTAGAG-AGCTACCT 1582 Query 867481 GCACCTAACCATACATATTTCATTTTACCCGTAATAGTATCTTTATATGCAGCTAACCAT 867540 |||| ||| |||||||||| | ||| | | | | || || ||| ||| | |||| Sbjct 1583 GCACTTAAAAATACATATTTTACATTATTATTGACATTTTCATTCCATGTAGCAAGCCAT 1642 Query 867541 TCTACTGTTTGATCATGAATAATATCCATCCATTGATGACCAGGAAGAGGTTCAGGAACG 867600 |||||| | |||||| || || ||||| ||| |||||| |||| |||||| Sbjct 1643 GTTACTGTATTATCATGCCGTATTTCTTTCCATGTATGCCCAGGAGGAGGAGAAGGAACA 1702 Query 867601 GGAGCATTTTTTCCAATATTAATAATAATATCTTCAGGA 867639 | |||| |||||| ||||||||||||| | ||| ||| Sbjct 1703 GTTGCATCTTTTCCTATATTAATAATAACTTGTTCTGGA 1741 >seq139 Length=17171 Score = 91.5 bits (100), Expect = 1e-12 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 297112 GATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGAT 297171 |||||| |||||| ||| | |||||||||||||| || || ||||| |||||| Sbjct 1659 GATTGGAATATTTCTCGAAACCGCTATTGGGGAACACCTATACCTCTTTGGGTCTCTGAT 1600 Query 297172 GATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATT 297231 ||| ||||||||| | || | |||||| ||| ||| | ||||| |||| ||| Sbjct 1599 GATTTTGAAGAAATTGTATGCGTAGGTTCAATTGCTGAACTTGAAGAACTTTCTGGAGAA 1540 Query 297232 GATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAAA 297291 ||| | | |||| | ||| ||||| || ||||| || | || |||||| | ||| Sbjct 1539 CGCAATTTGACTGATATTCATCGGGATAAGATAGATCATATTACTATACCTTCTAGAAAA 1480 Query 297292 GGAAAAGG 297299 || ||||| Sbjct 1479 GGCAAAGG 1472 Score = 89.7 bits (98), Expect = 3e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 296066 TTGAGAGAATTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATT 296125 |||| ||| | || | |||||||| | ||||||| ||||||||| | |||| | | Sbjct 2701 TTGAAAGATTGGGTCGTTGGATTGAATTCGATAATGATTATAAAACACTTGATACTCAAT 2642 Query 296126 TTATGGAATCTGTTATTTGGTCA---TTTAAACAACTTTATGAAAAGGAAATGATTTTTG 296182 ||||| ||||||| |||| |||||| || |||||||| | | || | | Sbjct 2641 TTATGCAATCTGTA---TGGTATATTTTTAAAATGCTCTATGAAAAAAACAGAATATATA 2585 Query 296183 AAGGTTATAAAGTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGG 296242 ||| | ||||||||| |||||||| | ||| | || || | | ||||||| | Sbjct 2584 GGAGTTTTCGAGTTATGCCATATTCTACAGCTTGTACGACGCCTCTTAGTAATTTTGAAG 2525 Query 296243 CAAAACAAAATTATAAAGAGATTATTGATCCATC 296276 | |||| ||||||||||| || |||||||||| Sbjct 2524 CTCAACAGAATTATAAAGATGTTGTTGATCCATC 2491 >seq75 Length=127942 Score = 86.0 bits (94), Expect = 4e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 476094 TTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATG 476153 |||| |||||||| | |||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 47600 TTCCACCTGCTCCTAAAGGAGTACCTCAGATTGAAGTGACCTTCGATATTGATGCTGATG 47541 Query 476154 GTATTCTTAATGTTACTGCT 476173 | ||| |||||||| ||||| Sbjct 47540 GAATTGTTAATGTTTCTGCT 47521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268163843642984