Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq195 168 3e-37 >seq195 Length=28285 Score = 168 bits (186), Expect = 3e-37 Identities = 349/512 (68%), Gaps = 8/512 (2%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 || ||||| ||||| |||||| |||| || ||| | ||||||||| || || Sbjct 13990 TTCGGACAAAATAAGCTCCAATCTTGATTTGCTTCCACTCGTTTCATAAATAAGTCAGGT 14049 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | ||||||| | |||||| |||| ||||||||||| |||||||| || Sbjct 14050 ATCCATAAGCCATAAAAAAGATCTCTTGCTCGAATTTCTTCTTTACCGTGATTTTTACGA 14109 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC- 26067 ||||| ||||| ||||| ||||||| ||||||||||||| ||| |||||||| || Sbjct 14110 AGATCCAAGAATTCAAATATATCTGCATGCCATGGTTCTATATAAATAGCAAAGGCGCCA 14169 Query 26068 -TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 ||| ||| |||||||| || || |||| ||||| | ||||| || | | || Sbjct 14170 GGACGCTTGTTC--CCACCTTGGTCAACATATCGAGCAGTATTGTTGAATACCCTGAGCA 14227 Query 26127 TTGGAACTAAT-CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTA 26185 | |||| |||| ||| | || || || || | ||| | || || | | | Sbjct 14228 TAGGAA-TAATACCATTAGATGTACCATTAGTTCCCGCAATATAACTCCCAGTAGCACGA 14286 Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 ||| ||| ||| | || ||||| || || ||| ||| ||||| | | Sbjct 14287 ATACAATGAACATTGAGCCCAATTCCTCCTGCTGTTTTACTAATCATGGCACATGTTTTA 14346 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | |||||| ||||||||| ||| |||| ||||||| || || || || || || Sbjct 14347 AGTGTATCATAAATTCCTTCAATGGAATCATCTTTCATAGTTACTAGGAAGCAGGACGAA 14406 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCT 26365 | ||| | || | ||||||| |||||||||||| |||| |||||| || |||| | Sbjct 14407 AGTTGAGGATTTGGAGTTCCTGCATTAAATAATGTAGGTGAAGCATGTGTCATATATTTT 14466 Query 26366 TCACTCA-AAGCTGTATAAGTTTCAAGAACTT 26396 || || ||| | |||| ||||||| | ||| Sbjct 14467 GCAGACATAAGAT-TATATGTTTCAATAGCTT 14497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038895954850